Thursday, April 27 14.00 - 14.15 Søren Brunak: Opening Remarks Bioinformatics and the Human Genome Chairman: Gunnar von Heijne 14.15 - 15.00 Beyond the Genome: Moving Toward Molecular Medicine Jeff Augen, Life Sciences, IBM Corporation 15.00 - 15.35 Computational Genome Screens for Noncoding RNA Genes Sean Eddy, Washington University Coffee 16.05 - 16.40 The Human Proteomics Initiative Claire O'Donovan, EMBL Outstation, EBI, Cambridge 16.40 - 17.15 ISIS, an Intron Information System, Reveals the High Frequency of Alternative Splicing in the Human Genome Søren Schandorff, University of Copenhagen 19.00 Dinner Evening "Get-together" Friday, April 28 Structure and Function Prediction Chairman: Arne Elofsson 9.00 - 9.45 From Genome Sequences to Protein Functions Todd Yeates, UCLA 9.45 - 10.20 Progress in ab initio Protein Structure Prediction David Baker, University of Washington Coffee 10.50 - 11.25 Comparative Protein Structure Modeling of Genes and Genomes Andrej Sali, Rockefeller University, New York 11.25 - 12.00 Improved Empirical Statistics for Similarity Searches Tim Bailey, University of California, San Diego 12.00 - 12.35 Comparative Genomics: Surveys of a Finite Parts List Mark Gerstein, Yale University Lunch Databases Chairman: Bo Servenius 14.15 - 15.00 The Gene Ontology Project - Helping Users of Genome Databases Michael Ashburner, EMBL Outstation, EBI, Cambridge 15.00 - 15.45 Visualization Tools for Analysis of Genome Data Mathias Uhlén, Royal Institute of Technology, Stockholm Coffee 16.15 - 16.50 Large Scale Decision Making: Enabling Scientists and Researchers through R&D Wide Decision Support Architectures Christopher Ahlberg, Spotfire 16.50 - 17.25 Exploring the Knowledge about Proteins: SWISS-PROT, TrEMBL, InterPro Rolf Apweiler, EMBL Outstation, EBI, Cambridge 17.30 - 18.00 Plenary meeting with SocBIN 19.00 Banquet Saturday, April 29 Algorithms Chairman: Inge Jonassen 10.00 - 10.45 Blundell's Bus Willie Taylor, MRC, NIMR Coffee 11.15 - 11.50 Proteomics in Post-Genomic Era: Finding Post-Translational Protein Modifications Pavel Pevzner, University of Southern California 11.50 - 12.25 Translating Genomic Information into Predictions of Immune Recognition Søren Buus, IMMI, University of Copenhagen Lunch 14.00 - 14.35 Hidden Markov models, Fisher kernels and Support Vector Machines for biosequence analysis David Haussler, University of California, Santa Cruz 14.35 - 15.10 A New Estimation Procedure for a Dayhoff-type Amino Acid Exchange Matrix Martin Vingron, DKFZ, Heidelberg Coffee 15.40 - 18.00 Poster Session 19.00 Dinner Evening Poster Session (continued) Sunday, April 30 Physiological Bioinformatics Chairman: Søren Brunak 9.00 - 9.45 Reconstruction of Metabolic Networks in silico and Formulation of Testable Experimental Hypothesis Bernhard Palsson, University of California, San Diego 9.45 - 10.20 Biomolecular Processes as Concurrent Computation: Modeling Signal Transduction in the Pi-calculus Process Algebra Aviv Regev, Tel Aviv University and Weizmann Institute Coffee 10.50 - 11.25 The Whole-Genome Assembly of Drosophila Gene Myers, Celera Genomics 11.25 - 12.00 Challenges for Bioinformatics: A Biologist's Perspective Kenneth Paigen, The Jackson Laboratory 12.30 - 13.00 Closing remarks Lunch
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