Multiple Alignment and Phylogeny

PHYLIP (programs for inferring phylogenies) Other phylogeny programs, a complication from PHYLIP documentation Tree of Life Home Page (information about phylogeny and biodiversity) Phylogenetic analysis programs (the tree of life list) Cladistic software (a list from the Willi Hennig Society) BCM search launcher for multiple sequence alignments WebLogo (sequence logo) Protein sequence logos using relative entropy RNA structure-sequence logo Previous: Pairwise Sequence and Structure Alignment Next: Prediction of Protein Structure from Sequence