Specialized Databases

ANU Bioinformatics Hypermedia Server (virus databases, classification and nomenclature of viruses) O-GLYCBASE (a revised database of O-glycosylated proteins) The Genome Sequence Database (GSDB) (complete, relational database of annotated DNA sequences) Database of Enzymes and Metabolic Pathways (EMP) E.coli database collection (ECDC) (compilation of DNA sequences of E. coli K12) BCM - Breast CancerData Base EcoCyc: Encyclopedia of Escherichia coli Genes and Metabolism GenProtEc (genes and proteins of Escherichia coli) YPD (proteins from Saccharomyces cerevisiae) LISTA, LISTA-HOP and LISTA-HON (compilation of homology databases fromyeast) FlyBase (Drosophila database) MPDB (molecular probe database) Compilation of tRNA sequences and sequences of tRNA genes Small RNA database, Baylor College of Medicine The uRNA database, University of Texas SRPDB (signal recognition particle database) RDP (the Ribosomal Database Project) Structure of small ribosomal subunit RNA Structure of large ribosomal subunit RNA RNA modification database HAMSTeRS (haemophilia A mutation database) and factor VIII mutationdatabase Haemophilia B (point mutations and short additions and deletions) Human p53, hprt and lacZ genes and mutations PAH mutation analysis (disease-producing human PAH loci) IMGT, the international ImMunoGeneTics database p53 mutations in human tumors and cell lines Androgen receptor gene mutations database Glucocorticoid receptor resource Thyroid hormone receptor resource 16SMDB and 23SMDB (16S and 23S ribosomal RNA mutation database) MITOMAP (human mitochondrial genome database) SWISS-2DPAGE (database of two-dimensional polyacrylamide gelelectrophoresis) PRINTS (protein fingerprint database) KabatMan (database of antibody structure and sequence information) ALIGN (compendium of protein sequence alignments) CATH (protein structure classification system) ProDom (protein domain database) Blocks database (system for protein classification) HSSP (homology-derived secondary structure of proteins) FSSP (fold classification based on structure-structure alignment ofproteins) SBASE protein domains (annotated protein sequence segments) TransTerm (database of translational signals) GRBase (database linking information on proteins involved in generegulation) ENZYME (nomenclature of enzymes) REBASE (database of restriction enzymes and methylases) RNaseP database TRANSFAC (database on transcription factors and their DNA binding sites) MHCPEP (database of MHC-binding peptides) Mouse genome database Mouse knockout database ATCC (American type culture collection) Histone sequence database of highly conserved nucleoprotein sequences 3Dee (database of protein structure domain definitions) NRL_3D (sequence-structure database derived from PDB, pictures andsearches) VBASE human variable immunoglulin gene sequences GPCRD (G protein-coupled receptor data) Other organisms genome databases (ACeDB-C. elegans, DictyDB-Dictyostelium discoideum, MycDB-Mycobacteria, PathoGenes-fungal pathogens of cereals) List of bacterial names with standing in nomenclature Locus specific mutation database Carbohydrate databases Human papillomaviruses database Human 2-D PAGE databases for proteome analysis in health and disease Kidney development database U.S. patent citation database Previous: Major Public Sequence Databases Next: Sequence Similarity Searches