Sequence Similarity Searches

Sequence similarity search page at EBI NCBI: BLAST notebook BLITZ ULTRA Fast Search at EMBL EMBL WWW services BioSCAN online at U. North Carolina Pattern scan of proteins or nucleotides The PRINTS/PROSITE scanner (search motif databases with query sequence) DARWIN system at ETH Zurich PimaII find sequence similarity using dynamic programming DashPat find sequence similarity using a hashcode comparison with a pattern library PROPSEARCH (search based on amino acid composition, EMBL) Sequence search protocol (integrated pattern search) GenQuest (Fasta, Blast, Smith Waterman; search in any database) SSearch (searches against a specified database) BCM Search Launcher (makes multiple searches from one input) Peer Bork search list (motif/pattern/profile searches) PROSITE Database Searches (search for functional sites in your sequence) PROWL-Protein Information Retrieval at Skirball Institute CEPH genotype database Advanced BLAST2 Search at EMBL Previous: Specialized Databases Next: Pairwise Sequence and Structure Alignment