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CBS Bioinformatics Tools

The access to the tools listed below is free and unlimited for all academic users. For other users the access is also free but limited. Please see here for the details of the access policy.

See also the services at http://www.cbs.dtu.dk/services/.


Blast2Logo
Generation of sequence-profile logos using PSI-blast.

DNA array tools
Tools for analysis of DNA microarray data.

EasyGibbs
Motif recognition in protein sequences by Gibbs sampler.

EasyPred
Development of neural network and weight matrix prediction methods for protein sequences.

FeatureExtract
Extraction of sequence and annotation, e.g. intron/exon structure, from GenBank entries and other GenBank format files.

FeatureMap3D
Combining protein sequence-based information with structural data from the Protein Data Bank (PDB).

Jetset
Selecting an optimal microarray probe set to represent a gene

MatrixPlot
Visualizing structural sequence constraints.

MaxAlign
Maximizing the number of characters that are present in gap-free columns - alignment area - by selecting an optimal subset of sequences in an alignment.

MHCMotifViewer
Easy browsing and visualisation of MHC class I and II binding motifs.

PHUSER
Designing optimal primers for USER fusion.

RevTrans
Multiple alignment of coding DNA using protein level information.

RNA Structure Logos
Displaying structural RNA alignments.

Seq2Logo
Sequence logo generator.

VirtualRibosome
A comprehensive tool for translating DNA sequences to the corresponding peptide sequences.

VDJsolver Analysis of human immunoglobulin VDJ recombination.