Tools for Analysis of DNA Microarray Data

• qspline for normalization of Affymetrix array data and spotted array data is available in the affy package of Bioconductor.

• ClustArray for clustering array data.

• OligoWiz for design of oligonucleotide probes for spotted arrays.

• ProbeWiz for design of PCR primers for spotted arrays.

• Promoter - for prediction of vertebrate promoter sites.