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Tools for Analysis of DNA Microarray Data

  • qspline for normalization of Affymetrix array data and spotted array data is available in the affy package of Bioconductor.

  • ClustArray for clustering array data.

  • OligoWiz for design of oligonucleotide probes for spotted arrays.

  • ProbeWiz for design of PCR primers for spotted arrays.

  • Promoter - for prediction of vertebrate promoter sites.