1. Specify the training sequences
All the input sequences must be in one-letter amino acid
code. The allowed alphabet (not case sensitive) is as follows:
A C D E F G H I K L M N P Q R S T V W Y
The training sequences can be input in the following two ways:
Paste a set of sequences, one sequence per line (just the amino acids)
into the upper left window.
Look here to see an example of the format.
You can also select a file (in the same format) on your local disk, either
by typing the file name into the lower left window or by browsing the disk.
3. Select evaluation examples (Optional)
The evaluation examples can either be one example per line
(optionally followed by an assigned value:
) or in fasta format
3. Customize your run by changing some of the advanced options (Optional)
4. Submit the job
Click on the "Submit"
button. The status of your job (either 'queued'
or 'running') will be displayed and constantly updated until it terminates and
the server output appears in the browser window.
At any time during the wait you may enter your e-mail address and simply leave
the window. Your job will continue; you will be notified by e-mail when it has
terminated. The e-mail message will contain the URL under which the results are
stored; they will remain on the server for 24 hours for you to collect them.