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Services are gradually being migrated to https://services.healthtech.dtu.dk/.
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SequenzaSequenzacancer NGS data analysisSequenza is a novel set of tools providing a fast python script to genotype cancer samples, and an R package to estimate cancer cellularity, ploidy, genome wide copy number profile and infer for mutated alleles. sequenza-utils PythonGetting Help
Mailing list at Google Groups - User Guide
Cellularity and ploidy estimationThe cellularity and ploidy values of the sample are estimated trough Bayesian inference. The results can be expressed in a selected confidence region (C.R.) and one point estimate. Copy number and mutations profileThe sequenza R package uses the estimated value of cellularity and ploidy to fit the data into the built-in model, estimating copy number and mutated allele from the data. Furthermore the package provides very intuitive, yet information rich graphics 
Genome wide profilingCopy number and allele composition, genome wide profiles 
GETTING HELP
Contact: :
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