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This site contains supplementary information and data sets from the paper
Comparison of Computational Methods for the Identification of Cell Cycle Regulated Genes
Ulrik de Lichtenberg, Lars Juhl Jensen, Anders Fausbøll, Thomas Skøt Jensen, Peer Bork and Søren Brunak
Bioinformatics, 21(7), 1164-1171, 2005 (Epub Oct 2004) [PubMed]
Ranked list of periodic genes with peak times |
Final results of our periodicity analysis. Contains combined rank and peaktime, as well as peak times in individual experiments.
The format is: ORF, rank, peak(combined), peak(alpha), peak(cdc15), peak(cdc28)
[ Top300 ]
[ Top500 ]
[ Top800 ] |
Benchmark sets |
[ B1 - from small scale experiments ]
[ B2 - from Chromatin IP ]
[ B3 - from MIPS "cell cycle" ]
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Benchmarked Methods |
Ranked and unranked list of genes identified by the various
methods included in the Benchmark. [ HTML ] |
Renormalized Cdc28 data |
Cdc28 data set renormalized with Q-spline:
[ Tab format ] |
CORRESPONDENCE
Ulrik Nicolai de Lichtenberg,
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