From the two t-tests:
> fc.Th[ order(t.pval.Th) ] [1:10]
    SLC7A5      KIF11    C1orf29   KIAA0101      CDC20     GARNL4       MICB 
-1.1060657  0.6082505  3.6931245  1.4301633  0.4454738  0.4562688  0.6838960 
      RRM2       OAS1       OAS1 
 1.4466054  1.6530430  1.9240594 
 
> fc.CTL[ order(t.pval.CTL) ] [1:10]
     DUSP8       PIGF     GTF2E1      IFI16       CCR5     CHI3L2    C10orf6 
-0.9767053  0.6449114  0.8589276  1.1565018  2.2925576  1.7866050  0.2963409 
    SLC7A5     TXNDC9     HIMAP4 
-1.3253478  1.0762418  1.6573616 


From the two-way ANOVA:
> names( HIV.pval[ order(HIV.pval) ] ) [1:20]
 [1] "SLC7A5"   "KIAA0101" "OAS1"     "HIMAP4"   "OAS1"     "CCR5"    
 [7] "IFI16"    "IFI16"    "RRM2"     "C1orf29"  "AIM2"     "CGI-01"  
[13] "IFI44"    "RRM2"     "TYMS"     "MX1"      "C3orf4"   "MGC2477" 
[19] "SMAD7"    "PDE4B"   

 
> names( CellType.pval[ order(CellType.pval) ] ) [1:20]
 [1] "CD8A"     "CD8B1"    "KLRK1"    "CD8B1"    "CRTAM"    "C3F"     
 [7] "HIC"      "BZRAP1"   "KIAA0182" "PECAM1"   "CGI-62"   "GPA33"   
[13] "ChGn"     "PCNT2"    "TIAM1"    "CSDA"     "KLRD1"    "XCL1"    
[19] "C9orf28"  "KLRD1"   


> names( Interaction.pval[ order(Interaction.pval) ] ) [1:10]
 [1] "CHI3L2"    "CCR5"      "ADCY9"     "KIF14"     "LOC146909" "PCAF"     
 [7] "ZBTB20"    "SDCCAG8"   "MAP3K7IP2" "ZNF174"