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Litterature
for Phd course in Immunological Bioinformatics
 Monday, September 23
- 13.00 - 13.45
- Introduction to bioinformatics and immunology
Ole Lund, Peder Worning & Søren Brunak, CBS
- 13.45 - 14.00
- Coffee Break
- 14.00 - 14.45
- The immune system
Søren Buus, Panum
- 14.45 - 15.00
- Coffee Break
- 15.00 - 17.00
- Exercises:
System
startup
Databases
and web resources in Immunological bioinformatics, OL
Tuesday, September 24
- 13.00 - 13.45
- Cellular immunity
Søren Buus, Panum
- 13.45 - 14.00
- Coffee Break
- 14.00 - 14.45
- Antibody mediated immunity
Kristian Schønning, Rigshospitalet
- 14.45 - 15.00
- Coffee Break
- 15.00 - 15.45
- Infectious diseases in the new millennium
Jens Ole Nielsen, Hvidovre Hospital
- 15.45 - 17.00
- Exercises:
Phylogeny
of immunological sequences, PW
Wednesday, September 25
- 13.00 - 13.45
- Phylogeny of immunological sequences
- 13.45 - 14.00
- Coffee Break
- 14.00 - 14.45
- Anti retroviral resistance
Claus Nielsen, Statens Serum Institut
- 14.45 - 15.00
- Coffee Break
- 15.00 - 17.00
- Exercises:
Viral
evolution, CL+AGP
Thursday, September 26
- 13.00 - 13.45
- Vaccine design in the 21st century
Nikolai Kirkby, Panum
- 13.45 - 14.00
- Coffee Break
- 14.00 - 14.45
- Modeling the immune system in the genome era
Søren Buus, Panum
- 14.45 - 15.00
- Coffee Break
- 15.00 - 17.00
- Exercises:
Intellectual
property rights in bioinformatics, OL
Friday, September 27
- 13.00 - 13.45
- Prediction of T-cell epitopes using neural
networks
Morten Nielsen, CBS
- 13.45 - 14.00
- Coffee Break
- 14.00 - 14.45
- Selection of epitopes using bioinformatics
tools
Claus Lundegaard, CBS
- 14.45 - 15.00
- Coffee Break
- 15.00 - 17.00
- Exercises:
Neural
network prediction of T cell epitopes, CL&MN
Monday, September 30
- 13.00 - 13.45
- Experimental and theoretical description of
peptide-MHC binding
Christina Sylvester-Hvid, Panum
Brunak, CBS
- 13.45 - 14.00
- Coffee Break
- 14.00 - 14.45
- Prediction of proteasome processing, and TAP
binding
Can Kesmir, Utrecht/CBS
- 14.45 - 15.00
- Coffee Break
- 15.00 - 15.45
- Review of mathematical and simmulation models
in immunology
- 16.00 - 17.00
- Exercises:
Prediction
of proteasome processing, and TAP binding, CK
Tuesday, October 1
- 13.00 - 13.45
- Discovery of disease related genes using analysis
of DNA array data. Example: HIV
Steen Knudsen, CBS
- 13.45 - 14.00
- Coffee Break
- 14.00 - 14.45
- Modeling of structural epitopes
Vsevolod
Katritch, Plexus Vaccine
- 14.45 - 15.00
- Coffee Break
- 15.00 - 17.00
- Exercises:
Modeling
of epitopes, MN
Wednesday, October 2
- 13.00 - 13.45
- DNA vaccines
Anders Fomsgaard, Statens Serum Institut
- 13.45 - 14.00
- Coffee Break
- 14.00 - 14.45
- Plasmid design
Anders Fomsgaard, Statens
Serum Institut
- 14.45 - 15.00
- Coffee Break
- 15.00 - 17.00
- Exercises:
Plasmid
design, Vaccine design, Gene Atlases, PW
Thursday, October 3
- 13.00 - 13.45
- Therapeutic vaccines
Steen Klysner, Pharmexa
- 13.45 - 14.00
- Coffee Break
- 14.00 - 14.45
- Vaccination against allergy
Jens Holm, ALK
- 14.45 - 15.00
- Coffee Break
- 15.00 - 17.00
- Exercises:
Use
of gene expression data, OL
Friday, October 4
- 13.00 - 13.45
- Information theory of the immune system
Peder Worning, CBS
Brunak, CBS
- 13.45 - 14.00
- Coffee Break
- 14.00 - 14.45
- Immune systems and systems biology
Søren
Brunak, CBS
- 14.45 - 15.00
- Coffee Break
- 15.00 - 16.40
- Exercises:
Information
content of immune processing, PW
- 16.40-17.00
- Summary of course and evaluation/discussion
For more information, please contact Peder
Worning or Johanne Keiding. |
