# ../code/PSSM/pep2mat A0201.single_lig # Fri Sep 26 11:01:32 2008 # User: mniel # PWD : /usr/opt/www/pub/CBS/courses/27623.algo/exercises/data # Host: IRIX64 organism 6.5 IP35 # Command line parameters set to: # [-blf filename] /home/people/mniel/matrices/blosum62.freq_rownorm Real value blosum matrix filename # [-v] 0 Verbose mode # [-b float] 50.000000 Weight on prior # [-sw] 0 Include sequece weighting # Number of PEP entries read 1 from file A0201.single_lig # Read_realblosum done. Alphabet ARNDCQEGHILKMFPSTWYV # Number of sequences nseq 1.000000 Last position-specific scoring matrix computed A R N D C Q E G H I L K M F P S T W Y V 1 A 3.942 -1.492 -1.628 -1.725 -0.422 -0.819 -0.830 0.163 -1.626 -1.309 -1.474 -0.764 -1.029 -2.243 -0.786 1.153 -0.063 -2.535 -1.741 -0.171 2 A -1.467 -2.195 -3.328 -3.658 -1.252 -2.139 -2.837 -3.593 -2.728 1.526 3.847 -2.394 1.977 0.438 -2.915 -2.460 -1.221 -1.745 -1.042 0.796 3 A 3.942 -1.492 -1.628 -1.725 -0.422 -0.819 -0.830 0.163 -1.626 -1.309 -1.474 -0.764 -1.029 -2.243 -0.786 1.153 -0.063 -2.535 -1.741 -0.171 4 A -0.753 2.085 -0.234 -0.760 -3.079 1.308 0.782 -1.553 -0.658 -2.602 -2.393 4.523 -1.379 -3.201 -0.998 -0.183 -0.723 -2.644 -1.775 -2.308 5 A 3.942 -1.492 -1.628 -1.725 -0.422 -0.819 -0.830 0.163 -1.626 -1.309 -1.474 -0.764 -1.029 -2.243 -0.786 1.153 -0.063 -2.535 -1.741 -0.171 6 A 3.942 -1.492 -1.628 -1.725 -0.422 -0.819 -0.830 0.163 -1.626 -1.309 -1.474 -0.764 -1.029 -2.243 -0.786 1.153 -0.063 -2.535 -1.741 -0.171 7 A 3.942 -1.492 -1.628 -1.725 -0.422 -0.819 -0.830 0.163 -1.626 -1.309 -1.474 -0.764 -1.029 -2.243 -0.786 1.153 -0.063 -2.535 -1.741 -0.171 8 A 3.942 -1.492 -1.628 -1.725 -0.422 -0.819 -0.830 0.163 -1.626 -1.309 -1.474 -0.764 -1.029 -2.243 -0.786 1.153 -0.063 -2.535 -1.741 -0.171 9 A -1.007 -1.392 -2.325 -2.852 -1.270 -0.550 -1.885 -2.794 -1.383 1.124 1.982 -1.368 5.367 0.073 -2.553 -1.318 -0.687 -1.401 -0.818 0.680