PSSM construction

The answer to this weeks exercise can be copied using the command (remember the . in the end of the cp command!)

cd src
cp /usr/opt/www/pub/CBS/courses/27625.algo/exercises/code/PSSM/pep2mat_ans.c .
cp /usr/opt/www/pub/CBS/courses/27625.algo/exercises/code/PSSM/pep2score_ans.c .

You can also see the output from the calcutations in

A0201.single_lig_mat
A0201.mat_b0_small.lig
A0201.mat_b50_small.lig
A0201.mat_small.lig_sw
A0201.mat_large.lig_sw
A0201.eval scored against A0201.mat_large.lig_sw

The Pearson's correlations should be

Pearson coefficient for N= 1266 data:  0.29528 for A0201.mat_b0_small.lig
Pearson coefficient for N= 1266 data:  0.40009 for A0201.mat_b50_small.lig
Pearson coefficient for N= 1266 data:  0.47668 for A0201.mat_small.lig_sw
Pearson coefficient for N= 1266 data:  0.70148 for A0201.mat_large.lig_sw