Smith Waterman sequence alignment

The answer to this weeks exercise can be copied using the command (remember the . in the end of the cp command!). Answers to the fast algorithm (fasta_align.c) will follow by the end of the week.

cd src
cp /usr/opt/www/pub/CBS/courses/27625.algo/exercises/code/align/fasta_align_O3_ans.c .
cp /usr/opt/www/pub/CBS/courses/27625.algo/exercises/code/align/fasta_align_ans.c .

It is important that you have a running program for an all against all alignment (the fasta_align_all program) for the exercise on Friday 7 October. So please make sure that you have made this part of the exercise.