# ../code/PSSM/pep2mat -b 50 A0201.small_lig # Fri Sep 26 11:03:50 2008 # User: mniel # PWD : /usr/opt/www/pub/CBS/courses/27623.algo/exercises/data # Host: IRIX64 organism 6.5 IP35 # -b 50.000000 Weight on prior # Command line parameters set to: # [-blf filename] /home/people/mniel/matrices/blosum62.freq_rownorm Real value blosum matrix filename # [-v] 0 Verbose mode # [-b float] 50.000000 Weight on prior # [-sw] 0 Include sequece weighting # Number of PEP entries read 10 from file A0201.small_lig # Read_realblosum done. Alphabet ARNDCQEGHILKMFPSTWYV # Number of sequences nseq 10.000000 Last position-specific scoring matrix computed A R N D C Q E G H I L K M F P S T W Y V 1 A 3.662 -1.425 -1.491 -1.946 -1.464 -1.116 -1.312 2.298 -2.059 -2.173 -2.328 0.584 -1.783 -2.926 -1.526 0.348 0.910 -2.997 -2.447 -1.216 2 A -1.722 -2.687 -3.634 -3.952 -1.678 -2.456 -3.196 -3.945 -3.127 1.851 3.816 -2.761 2.716 -0.236 -3.299 -2.697 -1.457 -2.301 -1.540 1.384 3 A 3.141 -1.739 3.270 -1.129 -1.584 -1.232 -1.386 -0.928 -1.432 -1.020 -0.234 -1.304 -1.088 -2.271 -1.881 0.079 -0.649 -3.061 -2.178 0.343 4 A 0.393 0.440 -0.992 -0.804 -3.107 0.405 2.290 0.641 -1.288 -3.142 -2.997 3.808 -2.140 -3.562 1.973 -0.538 -1.267 -3.212 -2.461 -2.593 5 A 3.092 0.642 -2.302 -2.592 -1.859 -1.562 -1.715 -1.378 -1.893 -1.853 -1.643 -1.244 -1.437 2.530 1.838 -0.393 -1.221 4.547 -0.109 -1.314 6 A 3.219 -2.431 -2.602 -2.693 -1.238 -1.847 -1.931 -1.482 -2.701 1.129 -0.778 -1.808 -0.726 -2.054 1.891 -0.365 -0.691 -3.121 -2.093 2.280 7 A 3.151 -1.661 -2.392 -2.613 -1.445 -1.506 -1.700 -1.459 -2.291 0.743 0.326 0.357 -0.519 1.146 -1.975 -0.397 -0.922 -2.364 -1.109 0.843 8 A 3.249 -2.054 -1.947 -2.341 -1.196 -1.510 -1.664 -1.238 -2.360 -0.417 0.988 -1.559 -0.435 -1.795 -1.753 1.142 1.077 -2.816 -2.012 0.701 9 A -1.120 0.748 0.904 -2.194 -1.794 -1.261 -1.927 -2.751 -2.078 0.525 0.813 -1.270 3.192 -1.403 -2.542 -0.885 1.990 -2.628 -1.819 2.171