Links

MHC-epitope prediction servers and associated datasets

• SYFPEITHI (Rammensee) . Database and prediction server for peptides that bind MHC molecules.

• MHCPEP (Brusic, Harrison). Database of MHC binding peptides

• FIMM (Functional Immunology, Schoenbach & Brusic) Database of functional molecular immunology.

• MHCBN (Raghava). Tools for subunit vaccine design.

• Bioinformatics & molecular analysis center(BIMAS, Kenneth Parker). HLA Peptide Binding Predictions.

• PREDEPP. MHC Class I epitope prediction.

• Epipredict (Wessels, Fleckenstein) MHC type II. Prediction of HLA class II restricted binding.

• Predict. Prediction of Class I, II and TAP binding.

• MAPPP. Combined opren reading frame (ORF) and epitope finder.

• propred. MHC binding predictions.

• PREDEPP. PC Program for Class II predictions can be downloaded.

• EpiMatrix (based on epimer). Commercial epitope prediction .

Prediction of proteasomal cleavage sites

• NetChop. A neural network based method for prediction of protasomal cleavage.

• paproc. A matrix based method for prediction of protasomal cleavage.

MHC sequence databases

• HIG. HLA sequence database.

• IMGT (EBI, ImMunoGeneTics database). Database with sequences for different MHC and HLA molecules.

• KABAT. Database with immunological sequences.

• MHCDB. "Registered users only" database of MHC sequences.

Other sites

• HIV Molecular Immunology database. HIV immunology.

• School of Crystallography, Birkbeck College, University of London,. Structure and Function of the Major Histocompatibility Complex (MHC) Proteins.

• ASHI. The American Society for Histocompatibility and Immunogenetics.

Links to lists of links

• syfpeithi

• FIMM