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CBS >> CBS Courses >> Brasil Workshop 2009 >> Course Programme >> Exercise groups

Organization of Exercice groups



You will work 2 and 2 on each computer. Each student will have around 10 genomes which they will work with, for a total of around for each subgroup. Together with one other group of 2 you will be making a presentation for Friday. 


We will look at 5 major divisions of organisms. Each group contain 4 groups of 2 students who are sharing a computer.


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Buchnera & friends group
====================

stud001
Baumannia cicadellinicola Hc
Buchnera aphidicola BCce
Carsonella ruddii PV
Dickeya zeae Ech1591
Escherichia coli K12 MG1655
Haemophilus ducreyi 35000HP
Klebsiella pneumoniae MGH78578
Photorhabdus luminescens TTO1
Salmonella enterica arizonae62z4z23
Sulcia muelleri Hc

stud002
Blochmannia floridanus
Buchnera aphidicola Bp
Buchnera aphidicola Tuc7
Citrobacter koseri ATCCBAA895
Erwinia tasmaniensis Et1-99
Escherichia coli O157-H7Sakai
Haemophilus influenzae RdKW20
Klebsiella pneumoniae NTUH-K2044
Proteus mirabilis HI4320
Shigella flexneri2a 301
Yersinia pestis KIM


stud003
Blochmannia pennsylvanicus BPEN
Buchnera aphidicola Sg
Dichelobacter nodosus VCS1703A
Escherichia coli BL21
Escherichia fergusonii ATCC35469
Hodgkinia cicadicola Dsem
Pectobacterium carotovorum PC1
Ruthia magnifica Cm
Sodalis glossinidius morsitans
Vesicomyosocius okutanii HA

stud004
Buchnera aphidicola APS
Dickeya dadantii Ech703
Escherichia coli CFT073
Francisella tularensis SCHU54
Klebsiella pneumoniae 342
Photorhabdus asymbiotica ATCC43949
Salmonella enterica TyphimuriumLT2
Sulcia muelleri GWSS
Wigglesworthia glossinidia Gbrevipalpis
Yersinia pestis CO92
Yersinia pseudotuberculosis PB1



====================
Vibrio groups
====================


stud005
Vibrio campbellii AND4               
Vibrio sp. MED222
Vibrio sp. Ex25   
Vibrio cholerae N16961               
Vibrio cholerae O395 TIGR               
Vibrio cholerae O395 TEDA                       
Vibrio vulnificus CMCP6
Vibrio cholerae M66-2
Aliivibrio salmonicida LFI1238                           
Pseudomonas mendocina ymp

stud006
Vibrio cholerae MO10               
Vibrio cholerae V52                 
Vibrio cholerae 12129(1)               
Vibrio cholerae VL426                 
Vibrio harveyi ATCC BAA-1116      
Vibrio splendidus LGP32
Vibrio vulnificus YJ016
Pseudomonas aeruginosa LESB58
Pseudomonas aeruginosa PA7
Pseudomonas entomophila L48


stud007
Vibrio fischeri ES114
Vibrio fischeri MJ11
Vibrio cholerae MJ-1236               
Vibrio cholerae MZO-2               
Vibrio cholerae 1587                               
Vibrio cholerae RC9                       
Vibrio cholerae 2740-80               
Vibrio parahaemolyticus 16               
Pseudomonas aeruginosa PAO1
Pseudomonas aeruginosa UCBPP PA14

stud008
Vibrio cholerae BX330286               
Vibrio cholerae TMA 21               
Vibrio cholerae AM-19226                               
Vibrio parahaemolyticus RIMD2210633
Vibrio shilonii AK1   
Vibrio cholerae TM 11079-80               
Vibrio cholerae B33              
Pelagibacter ubique HTCC1062                
Pseudomonas fluorescens Pf01
Pseudomonas fluorescens Pf5


====================
Mycobacterium groups
====================

stud009
Mycobacterium abscessus ATCC19977
Mycobacterium bovis AF2122-97
Mycobacterium gilvum PYR-GCK
Mycobacterium smegmatis M C2-155
Mycobacterium tub CDC1551
Mycobacterium ulcerans Agy99
Pseudomonas putida F1
Photobacterium profundum SS9             
Pseudomonas putida GB1
Pseudomonas putida KT2440

stud010
Mycobacterium avium 104
Mycobacterium bovis BCGMoreauRDJ
Mycobacterium leprae Br4923
Mycobacterium species JLS
Mycobacterium tub F11
Pseudomonas putida W619
Pseudomonas stutzeri A1501
Pseudomonas syringae phaseolicola1448A
Pseudomonas syringae tomatoDC3000
Pseudomonas fluorescens SBW25


stud011
Mycobacterium avium ATCC25291
Mycobacterium bovis BCGPasteur11723P2
Mycobacterium leprae TN
Mycobacterium species KMS
Mycobacterium tub H37Ra
Mycobacterium vanbaalenii PYR-1

stu012
Mycobacterium avium paraK10
Mycobacterium bovis BCGTokyo172
Mycobacterium marinum M
Mycobacterium species MCS
Mycobacterium tub H37Rv




====================
Chlorobium/Bacteroides group:
====================

stud013
Chlorobaculum parvum NCIB8327 pid29213
Bacteroides fragilis NCTC 9343      
Bacteroides fragilis YCH46                        
Gramella forsetii KT0803                       
Chlorobium chlorochromatii CaD3
Chlorobium phaeobacteroides DSM266
Pelodictyon luteolum DSM273

stud014
Parabacteroides distasonis ATCC 8503       
Chlorobium limicola
Chlorobium phaeobacteroides BS1
Chloroherpeton thalassium ATCC35110
Pelodictyon phaeoclathratiforme BU1
Porphyromonas gingivalis ATCC 33277               


stud015
Prosthecochloris aestuarii DSM271
Bacteroides vulgatus ATCC 8482 
Bacteroides thetaiotaomicron VPI-5482                     
Porphyromonas gingivalis W83                       
Amoebophilus asiaticus 5a2       
Cytophaga hutchinsonii ATCC 33406               
Salinibacter ruber DSM 13855               

stud016
Chlorobium phaeovibrioides DSM265
Chlorobium tepidum TLS
Flavobacterium johnsoniae UW101  
Flavobacterium psychrophilum JIP02/86                                    
Sulcia muelleri GWSS       
Azobacteroides pseudotrichonymphae genomovar. CFP2



====================
Prochlororoccus
====================


stud017
Prochlorococcus marinus AS9601
Prochlorococcus marinus CCMP1375
Prochlorococcus marinus MED4
Synechococcus elongatus PCC6301
Synechococcus species CC9311
Synechococcus species CC9605
Synechococcus species CC9902

stud018
Prochlorococcus marinus MIT9211
Prochlorococcus marinus MIT9215
Prochlorococcus marinus MIT9303
Synechococcus elongatus PCC7942
Synechococcus species JA23Ba213
Synechococcus species JA33Ab

stud019
Prochlorococcus marinus MIT93101
Prochlorococcus marinus MIT9312
Prochlorococcus marinus MIT9313
Thermosynechococcus elongatus BP1
Synechococcus species PCC6803
Synechococcus species PCC7002
Synechococcus species RCC307

stud020
Prochlorococcus marinus MIT9515
Prochlorococcus marinus NATL1A
Prochlorococcus marinus NATL2A
Trichodesmium erythraeum IMS101
Synechococcus species WH7803
Synechococcus species WH8102