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Organization of Exercice groupsYou will work 2 and 2 on each computer. Each student will have around 10 genomes which they will work with, for a total of around for each subgroup. Together with one other group of 2 you will be making a presentation for Friday. We will look at 5 major divisions of organisms. Each group contain 4 groups of 2 students who are sharing a computer. ==================== Buchnera & friends group ==================== stud001 Baumannia cicadellinicola Hc Buchnera aphidicola BCce Carsonella ruddii PV Dickeya zeae Ech1591 Escherichia coli K12 MG1655 Haemophilus ducreyi 35000HP Klebsiella pneumoniae MGH78578 Photorhabdus luminescens TTO1 Salmonella enterica arizonae62z4z23 Sulcia muelleri Hc stud002 Blochmannia floridanus Buchnera aphidicola Bp Buchnera aphidicola Tuc7 Citrobacter koseri ATCCBAA895 Erwinia tasmaniensis Et1-99 Escherichia coli O157-H7Sakai Haemophilus influenzae RdKW20 Klebsiella pneumoniae NTUH-K2044 Proteus mirabilis HI4320 Shigella flexneri2a 301 Yersinia pestis KIM stud003 Blochmannia pennsylvanicus BPEN Buchnera aphidicola Sg Dichelobacter nodosus VCS1703A Escherichia coli BL21 Escherichia fergusonii ATCC35469 Hodgkinia cicadicola Dsem Pectobacterium carotovorum PC1 Ruthia magnifica Cm Sodalis glossinidius morsitans Vesicomyosocius okutanii HA stud004 Buchnera aphidicola APS Dickeya dadantii Ech703 Escherichia coli CFT073 Francisella tularensis SCHU54 Klebsiella pneumoniae 342 Photorhabdus asymbiotica ATCC43949 Salmonella enterica TyphimuriumLT2 Sulcia muelleri GWSS Wigglesworthia glossinidia Gbrevipalpis Yersinia pestis CO92 Yersinia pseudotuberculosis PB1 ==================== Vibrio groups ==================== stud005 Vibrio campbellii AND4 Vibrio sp. MED222 Vibrio sp. Ex25 Vibrio cholerae N16961 Vibrio cholerae O395 TIGR Vibrio cholerae O395 TEDA Vibrio vulnificus CMCP6 Vibrio cholerae M66-2 Aliivibrio salmonicida LFI1238 Pseudomonas mendocina ymp stud006 Vibrio cholerae MO10 Vibrio cholerae V52 Vibrio cholerae 12129(1) Vibrio cholerae VL426 Vibrio harveyi ATCC BAA-1116 Vibrio splendidus LGP32 Vibrio vulnificus YJ016 Pseudomonas aeruginosa LESB58 Pseudomonas aeruginosa PA7 Pseudomonas entomophila L48 stud007 Vibrio fischeri ES114 Vibrio fischeri MJ11 Vibrio cholerae MJ-1236 Vibrio cholerae MZO-2 Vibrio cholerae 1587 Vibrio cholerae RC9 Vibrio cholerae 2740-80 Vibrio parahaemolyticus 16 Pseudomonas aeruginosa PAO1 Pseudomonas aeruginosa UCBPP PA14 stud008 Vibrio cholerae BX330286 Vibrio cholerae TMA 21 Vibrio cholerae AM-19226 Vibrio parahaemolyticus RIMD2210633 Vibrio shilonii AK1 Vibrio cholerae TM 11079-80 Vibrio cholerae B33 Pelagibacter ubique HTCC1062 Pseudomonas fluorescens Pf01 Pseudomonas fluorescens Pf5 ==================== Mycobacterium groups ==================== stud009 Mycobacterium abscessus ATCC19977 Mycobacterium bovis AF2122-97 Mycobacterium gilvum PYR-GCK Mycobacterium smegmatis M C2-155 Mycobacterium tub CDC1551 Mycobacterium ulcerans Agy99 Pseudomonas putida F1 Photobacterium profundum SS9 Pseudomonas putida GB1 Pseudomonas putida KT2440 stud010 Mycobacterium avium 104 Mycobacterium bovis BCGMoreauRDJ Mycobacterium leprae Br4923 Mycobacterium species JLS Mycobacterium tub F11 Pseudomonas putida W619 Pseudomonas stutzeri A1501 Pseudomonas syringae phaseolicola1448A Pseudomonas syringae tomatoDC3000 Pseudomonas fluorescens SBW25 stud011 Mycobacterium avium ATCC25291 Mycobacterium bovis BCGPasteur11723P2 Mycobacterium leprae TN Mycobacterium species KMS Mycobacterium tub H37Ra Mycobacterium vanbaalenii PYR-1 stu012 Mycobacterium avium paraK10 Mycobacterium bovis BCGTokyo172 Mycobacterium marinum M Mycobacterium species MCS Mycobacterium tub H37Rv ==================== Chlorobium/Bacteroides group: ==================== stud013 Chlorobaculum parvum NCIB8327 pid29213 Bacteroides fragilis NCTC 9343 Bacteroides fragilis YCH46 Gramella forsetii KT0803 Chlorobium chlorochromatii CaD3 Chlorobium phaeobacteroides DSM266 Pelodictyon luteolum DSM273 stud014 Parabacteroides distasonis ATCC 8503 Chlorobium limicola Chlorobium phaeobacteroides BS1 Chloroherpeton thalassium ATCC35110 Pelodictyon phaeoclathratiforme BU1 Porphyromonas gingivalis ATCC 33277 stud015 Prosthecochloris aestuarii DSM271 Bacteroides vulgatus ATCC 8482 Bacteroides thetaiotaomicron VPI-5482 Porphyromonas gingivalis W83 Amoebophilus asiaticus 5a2 Cytophaga hutchinsonii ATCC 33406 Salinibacter ruber DSM 13855 stud016 Chlorobium phaeovibrioides DSM265 Chlorobium tepidum TLS Flavobacterium johnsoniae UW101 Flavobacterium psychrophilum JIP02/86 Sulcia muelleri GWSS Azobacteroides pseudotrichonymphae genomovar. CFP2 ==================== Prochlororoccus ==================== stud017 Prochlorococcus marinus AS9601 Prochlorococcus marinus CCMP1375 Prochlorococcus marinus MED4 Synechococcus elongatus PCC6301 Synechococcus species CC9311 Synechococcus species CC9605 Synechococcus species CC9902 stud018 Prochlorococcus marinus MIT9211 Prochlorococcus marinus MIT9215 Prochlorococcus marinus MIT9303 Synechococcus elongatus PCC7942 Synechococcus species JA23Ba213 Synechococcus species JA33Ab stud019 Prochlorococcus marinus MIT93101 Prochlorococcus marinus MIT9312 Prochlorococcus marinus MIT9313 Thermosynechococcus elongatus BP1 Synechococcus species PCC6803 Synechococcus species PCC7002 Synechococcus species RCC307 stud020 Prochlorococcus marinus MIT9515 Prochlorococcus marinus NATL1A Prochlorococcus marinus NATL2A Trichodesmium erythraeum IMS101 Synechococcus species WH7803 Synechococcus species WH8102 |
