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Monday, August 13 Tuesday, August 14 Wednesday, August 15 Thursday, August 16 Friday, August 17
1 Introduction to the workshop
Fabiano Thompson
7 20 Methods to compare bacterial genomes
David Ussery
13 Genome annotation: Gene finding, rRNA and tRNA
Carsten Friis
19 Transcriptional regulation in Bacterial Genomes
David Ussery
25 Metagenomics: principles and approaches
Gilna
9:00-10:00
  10:00-10:30
(Break)
2 An Overview of Microbial Genomes
David Ussery
8 Genome evolution
Dirk Gevers
14 Ex: Genome annotation
Kristoffer Kiil
20 Secreted proteins and membrane-bound proteins - a genomic view
Carsten Friis
26 Ex: Bioinformatics tools for understanding and mining metagenomic data
Gilna
10:30-11:30
3 Ex: Comparative Microbial Genomics
Kristoffer Kiil
9 The Prokaryotic species in a genomic era
Dirk Gevers
15 Recombination
Bill Hanage
21 Bacterial Pan-Genomics
David Ussery
27 Summary of the workshop
David Ussery Fabiano Thompson Dirk Gevers Kristoffer Kiil Carsten Friis Bill Hanage Gilna
11:30-12:30
  12:30-13:30
(Lunch break)
4 An Introduction to Bioinformatic Methods.
Carsten Friis
10 Ex: From comparative genomics to a sequence-based taxonomy I
Dirk Gevers
16 Ecology
Bill Hanage
22 Ex: Pan-Genomics from a practical perspective
Kristoffer Kiil
13:30-14:30
5 AT content: DNA Structures, curvature, melting and flexibility in bacterial genomes
Carsten Friis
11 Ex: From comparative genomics to a sequence-based taxonomy II
Dirk Gevers
17 Introduction to atlases
Carsten Friis
23 MLST
Bill Hanage
14:30-15:30
  15:30-16:00
(Break)
6 Ex: DNA structures + AT content
Kristoffer Kiil
12 Ex: From comparative genomics to a sequence-based taxonomy III
Dirk Gevers
18 Ex: Configuring and analysing genome atlases
Kristoffer Kiil
24 Ex: The 'A' bit of MLSA - final locus selection, tree building and analysis
Bill Hanage
16:00-17:00