NOTE: These pages remain online for reference only; in the programme below you will find links to the lecture notes, exercise cookbooks and example solutions to problems etc.

Bioinformatics of Immunology: workshop programme

The workshop will be held on Jan 24-26, 2007 at the Center for Biological Sequence Analysis, BioCentrum, Technical University of Denmark, building 208, room 62, in Lyngby, Denmark.

• Wednesday, January 24

  11:30 - 12:00	Registration
  12:00 - 13:00	Lunch
  13:00 - 13:15	Welcome, practical information
  13:15 - 14:00	Lecture:   Immunological bioinformatics Can Kesmir, Theoretical Biology, University of Utrecht
  14:00 - 14:45	Lecture:   The IEDB database Jason Greenbaum, La Jolla Institute for Allergy and Immunology
  14:45 - 15:00	Coffee Break
  15:00 - 15:20	Lecture:   Prediction of CTL responses Mette Voldby Larsen, CBS
  15:20 - 15:40	Lecture:   Prediction of B cell epitopes Pernille Haste Andersen, CBS
  15:40 - 16:00	Lecture:   Finding malaria epitopes Thomas Rask, CBS
  16:00 - 16:45	Lecture:   Immunological feature predictions and databases on the web Ole Lund, CBS
  16:45 - 17:00	Preparation of the exercises Kristoffer Rapacki, CBS

• Thursday, January 25

  9:00 - 11:00	Exercise 1: Prediction of immunological features using web based tools Coffee will be available 10:00-11:00
  11:00 - 11:45	Lecture:   Accessing SOAP based Web Services using Perl: Download slides: Keynote  PDF Peter Hallin, CBS
  11:45 - 13:00	Lunch
  13:00 - 14:45	Exercise 2: Accessing SOAP based Web Services using Perl
  14:45 - 15:15	Coffee Break
  15:15 - 16:00	Lecture:   SVMHC: a server for prediction of MHC-binding peptides Oliver Kohlbacher, Div. for Simulation of Biological Systems, WSI, University of Tuebingen
  16:00 - 16:45	Lecture:   Preparing for Taverna, using SOAP - graphical interface to SOAP based Web Services Francisco Roque, CBS
  17:00 - 18:20	Free discussion and networking Drinks and snacks
  18:20	Arranged transportation to the restaurant
  19:00	Workshop Dinner

• Friday, January 26

  9:30 - 11:00	Exercise 3: Using Taverna to Access SOAP based Web Services Coffee will be available throughout the exercise
  11:00 - 11:45	Lecture:   Covering Host and Pathogen Variability Morten Nielsen, CBS
  11:45 - 12:30	Closing remarks, discussion Summary of the services and softwares used in the exercises
  12:30 - 13:30	Lunch
  13:30	Departure

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