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NOTE: These pages remain online for reference only; in the
programme below you will find links to the lecture notes, exercise cookbooks
and example solutions to problems etc.
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EMBRACE Workshop for Web Service Providers in Bioinformatics:
workshop programme
The workshop was held on Jun 2-4, 2010 at the Center for Biological
Sequence Analysis, Technical University of Denmark, building 208,
in Lyngby, Denmark.
Wednesday, June 2
| 11:30 - 12:00
| Registration
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12:00 - 13:00
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Lunch
| | 13:00 - 13:15
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Welcome, practical information
Kristoffer Rapacki, CBS, Denmark
| | 13:15 - 14:00
| Lecture: EMBRACE Guidelines for
Web Service providers
Jean Salzemann, CNRS, France
| | 14:00 - 14:30
| Lecture: Promoting services
with annotation and registries
Hamish McWilliam, EBI, UK
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14:30 - 15:00
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Coffee Break
| | 15:00 - 16:00
| Lecture: Use of externally
defined data types, BioXSD
Matus Kalas, BCCS, Norway
| | 16:00 - 16:55
| Lecture: Semantic annotation
of Web Services,
EDAM
Jon Ison, EBI, UK
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16:55 - 17:00
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Quick coffee Break
| | 17:00 - 17:30
| Lecture: Deployment of
BioXSD-enabled services on a Cloud
(link to IBCP Web
Services)
Christophe Blanchet, CNRS, France
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Thursday, June 3
| 9:00 - 12:00
| Hands-on exercises: Datatypes
and semantic annotation
Matus Kalas, Jon Ison, Edita Bartaseviciute
Coffee will be available throughout the exercise
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12:00 - 13:15
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Lunch
| | 13:15 - 15:00
| Exercises: Datatypes and semantic annotation, continued
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15:00 - 15:15
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Coffee Break
| | 15:15 - 17:00
| Lecture: Publishing Web
Services - a provider's point of view
Rodrigo Lopez, EBI, UK
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17:00 - 18:20
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Free discussion, networking,
drinks and snacks
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18:20
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Arranged transportation
to the restaurant
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19:00
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Workshop Dinner at the restaurant
Det Lille
Apotek
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Friday, June 4
| 9:00 - 11:30
| Hands-on exercise: Publishing
at BioCatalogue
Rodrigo Lopez and Hamish McWilliam,
EBI, UK
Coffee will be available throughout the exercise
| | 11:30 - 12:00
| Closing remarks, discussion
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12:00 - 13:00
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Lunch
| | 13:00
| Departure
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RELEVANT LINKS
BioXSD
http://bioxsd.org
EDAM
http://edamontology.sourceforge.net/
http://sourceforge.net/projects/edamontology/
BioCatalogue
http://www.biocatalogue.org/
CONTACT
Kristoffer Rapacki,
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