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MedVetNet Microarray Data Analysis Workshop
The course will be held from May 14 - 16, 2008 (incl.)
Lectures and exercises will take place in Room 062, Building 208, Danish Technical University, Lyngby, Denmark
An introduction to R is available on-line.
Beginner's Guide to UNIX is available on-line.
Course Programme
 Wednesday, May 14
- 12.00-14.00
- Welcome session (with food, e.g. sandwiches)
- Carsten Friis & David W. Ussery, CBS
- 14:00-14:30
- Introduction to Pangenomics, core/pan genomes
- David W. Ussery
- 14:30-16:00
- Each participant gives short presentation of himself/herself and his/her work (<5 min. each; max 1 slide)
- 16:00-16:30
- Coffee Break
- 16:30-17:30
- Exercise in pangenomics (slides)(exercise)
- Peter F. Hallin & Carsten Friis
- 17:30-17:45
- Test of the day
- David W. Ussery
- 19:00
- Dinner in Copenhagen
- Restaurant Address
Thursday, May 15
NOTE: The morning lectures will take place in Building 306, Auditorium 37. Please see the Map of DTU
- 9:00-10:45
- Introduction to R (slides)(exercise)
- Carsten Friis & Peter F. Hallin
- 10:45-11:15
- Coffee Break
- 11:15-12:00
- Probe Design in a Pan-genomic World (slides)
- Carsten Friis
NOTE: The afternoon lectures take place back in Building 208, Auditorium 62
- 12:00-13.00
- Lunch Break
- 13:00-14:30
- Exercise in Probe Design (exercise)
- Carsten Friis & Peter F. Hallin
- 14:30-15:15
- Comparative Genomics Hybridization (CGH) (slides)
- Carsten Friis
- 15:15-15:45
- Coffee Break
- 15:45-17:00
- Exercise in CGH (exercise)
- Carsten Friis & Peter F. Hallin
- 17:00-17:15
- Test of the day
- Carsten Friis
- 18.30
- Dinner in Copenhagen
- Restaurant Address
Friday, May 16
- 9.00-10.00
- Exercise in CGH – Part 2 (exercise)
- Carsten Friis & Peter F. Hallin
- 10:00-10:30
- Cofee Break
- 10:30-11:30
- Normalization and pre-processing (slides)
- Carsten Friis
- 11:30-12:00
- Final discussion and course evaluation (Evaluation Form)
- 12:00-13.00
- Lunch and farewells
- 13.00
- End of course
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