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MedVetNet Microarray Data Analysis Workshop

The course will be held from May 14 - 16, 2008 (incl.)
Lectures and exercises will take place in Room 062, Building 208, Danish Technical University, Lyngby, Denmark

An introduction to R is available on-line.
Beginner's Guide to UNIX is available on-line.


Course Programme




O Wednesday, May 14

12.00-14.00
Welcome session (with food, e.g. sandwiches)
Carsten Friis & David W. Ussery, CBS
14:00-14:30
Introduction to Pangenomics, core/pan genomes
David W. Ussery
14:30-16:00
Each participant gives short presentation of himself/herself and his/her work (<5 min. each; max 1 slide)
16:00-16:30
Coffee Break
16:30-17:30
Exercise in pangenomics (slides)(exercise)
Peter F. Hallin & Carsten Friis
17:30-17:45
Test of the day
David W. Ussery

19:00
Dinner in Copenhagen
Restaurant Address


O Thursday, May 15

NOTE: The morning lectures will take place in Building 306, Auditorium 37. Please see the Map of DTU

9:00-10:45
Introduction to R (slides)(exercise)
Carsten Friis & Peter F. Hallin
10:45-11:15
Coffee Break
11:15-12:00
Probe Design in a Pan-genomic World (slides)
Carsten Friis

NOTE: The afternoon lectures take place back in Building 208, Auditorium 62


12:00-13.00
Lunch Break

13:00-14:30
Exercise in Probe Design (exercise)
Carsten Friis & Peter F. Hallin
14:30-15:15
Comparative Genomics Hybridization (CGH) (slides)
Carsten Friis
15:15-15:45
Coffee Break
15:45-17:00
Exercise in CGH (exercise)
Carsten Friis & Peter F. Hallin
17:00-17:15
Test of the day
Carsten Friis

18.30
Dinner in Copenhagen
Restaurant Address


O Friday, May 16

9.00-10.00
Exercise in CGH – Part 2 (exercise)
Carsten Friis & Peter F. Hallin
10:00-10:30
Cofee Break
10:30-11:30
Normalization and pre-processing (slides)
Carsten Friis
11:30-12:00
Final discussion and course evaluation (Evaluation Form)

12:00-13.00
Lunch and farewells

13.00
End of course