>HIV1B5 P04587 POL polyprotein [Contains: Protease (Retro
FFREDLAFLQGKAREFSSEQTRANSPTISSEQTRANSPTRRELQVWGRDNNSPSEAGADR
QGTVSFNFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGG
FIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLK
PGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRK
LVDFRELNRRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIP
SINNETPGSGYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDL
EIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTIQPIVLPEKDSWT
VNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEP
VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQ
KITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEP
IVGAETFYVDGAASRETKLGKAGYVTNRGRQKVVTLTHTTNQKTELQAIHLALQDSGLEV
NIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVS
AGIRKILFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQ
VDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTI
HTDNGSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLK
TAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRNP
LWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED
>HIV1H2 P04585 POL polyprotein [Contains: Protease (Retro
FFREDLAFLQGKAREFSSEQTRANSPTRRELQVWGRDNNSPSEAGADRQGTVSFNFPQVT
LWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILI
EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWP
LTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQ
DFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQ
YNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEEL
RQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLN
WASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDL
IAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGK
TPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGA
ANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGI
IQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGI
DKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDC
THLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTGAT
VRAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNF
KRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRNPLWKGPAKLLWKG
EGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED
>HIV1MN P05961 POL polyprotein [Contains: Protease (Retro
FFREDLAFLQGKAEFSSEQNRANSPTRRELQVWGRDNNSLSEAGEEAGDDRQGPVSFSFP
QITLWQRPIVTIKIGGQLKEALLDTGADDTVLGEMNLPRRWKPKMIGGIGGFIKVRQYDQ
ITIGICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVK
QWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNK
KTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGI
RYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRAKI
EELRRHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVG
KLNWASQIYAGIKVKQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPS
KDLIAEVQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVI
WGKTPKFRLPIQKETWETWWTEYTXATWIPEWEVVNTPPLVKLWYQLEKEPIVGAETFYV
DGAANRETKKGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYA
LGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFL
DGIDKAQEDHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQ
LDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGPNFT
STTVKAACWWTGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKRAVQMAVFI
HNFKRKGGIGGYSAGERIVGIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLL
WKGEGAVVIQDNNDIKVVPRRKAKVIRDYGKQTAGDDCVASRQDED
>HIV1N5 P12497 POL polyprotein [Contains: Protease (Retro
FFREDLAFPQGKAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQGTVSFSFPQIT
LWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVGQYDQILI
EICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWP
LTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQ
DFWEVQLGIPHPAGLKQKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQ
YNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEEL
RQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLN
WASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGVYYDPSKDL
IAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMKGAHTNDVKQLTEAVQKIATESIVIWGK
TPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGA
ANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGI
IQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDGLVSAGIRKVLFLDGI
DKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDC
THLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTT
VKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNF
KRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPVWKGPAKLLWKG
EGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED
>HIV1ND P18802 POL polyprotein [Contains: Protease (Retro
FFREDLAFPQGKAGEFSSEQTRANSPTSRELRVWGGDNPLSETGAERQGTVSFSFPQITL
WQRPLVTIKIGGQLKEALLDTGADDTVLEEINLPGKWKPKMIGGIGGFIKVRQYDQILIE
ICGYKAMGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPL
TEEKIKALTEICTEMEKEGKISRIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQD
FWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQY
NVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRTKIEELR
EHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPINLPEKESWTVNDIQKLVGKLNW
ASQIYAGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGVYYDPSKDLI
AELQKQGDGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVIWGKT
PKFKLPIQKETWETWWIEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAA
NRETKLGKAGYVTDRGRQKVVPFTDTTNQKTELQAINLALQDSGLEVNIVTDSQYALGII
QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSQGIRKVLFLDGID
KAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCT
HLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKVVHTDNGSNFTSATV
KAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFK
RKGGIGGYSAGERIIDIIATDIQTRELQKQIIKIQNFRVYYRDSRDPIWKGPAKLLWKGE
GAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDDCVASRQDED
>HIV1OY P20892 POL polyprotein [Contains: Protease (Retro
FFREDLAFPQGKAREFSSEQTRANSPTSRELRVWGRDNNSPSEAGADRQGTVSFNLPQIT
LWQRPIVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILI
EICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWP
LTEEKIKVLIEICTEMEKEGKISKVGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQ
DFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQ
YNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEEL
RQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIMLPEKDSWTVNDIQKLVGKLN
WASQIYAGIKVKNLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDL
VAELQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITQESIVIWGK
TPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKDPIVGAETFYVDGA
ANRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGI
IQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGI
DKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDC
THLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSNFTSTT
VKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNF
KRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSREPLWKGPAKLLWKG
EGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED
>HIV1PV P03368 POL polyprotein [Contains: Protease (Retro
FFREDLAFLQGKAREFSSEQTRANSPTISSEQTRANSPTRRELQVWGRDNNSPSEAGADR
QGTVSFNFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGG
FIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLK
PGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRK
LVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIP
SINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDL
EIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWT
VNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEP
VHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQ
KITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEP
IVGAETFYVDGAANRETRLGKAGYLTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEV
NIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKQKVYLAWVPAHKGIGGNEQVDKLVS
AGIRKILFLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQ
VDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTI
HTDNGSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLK
TAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRNP
LWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED
>HIV1U4 P24740 POL polyprotein [Contains: Protease (Retro
FFRENLAFQQGEAREFSSEQTRANSPTSRNLWDGGKDDLPCETGAERQGTDSFSFPQITL
WQRPLVTVKIGGQLIEALLDTGADDTVLEDINLPGKWKPKIIGGIGGFIKVRQYDQILIE
ICGKKTIGTVLVGPTPVNIIGRNMLTQIGCTLNFPISPIETVPVKLKPEMDGPKVKQWPL
TEEKIKALTEICNEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQD
FWEVQLGIPHTAGLKKKKSVTVLDVGDAYFSVPLDESFRKYTAFTIPSINNETPGVRYQY
NVLPQGWKGSPSIFQSSMTKILEPFRSQHPDIVIYQYMDDLYVGSDLEIGQHRAKIEELR
AHLLSWGFITPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNW
ASQIYAGIKVKQLCKLLRGAKALTDIVTLTEEAELELAENREILKDPVHGVYYDPSKDLV
AEIQKQGQDQWTYQIYQEPFKNLKTGKYARKRSAHTNDVKQLTEVVQKVSTESIVIWGKI
PKFRLPIQKETWEAWWMEYWQATWIPEWEFVNTPPLVKLWYQLEKDPIAGAETFYVDGAA
NRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQDSGSEVNIVTDSQYALGII
QAQPDRSESEIVNQIIEKLIEKEKVYLSWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGID
KAQEDHEKYHCNWRAMASDFNLPPVVAKEIVASCNKCQLKGEAMHGQVDCSPGIWQLDCT
HLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKVIHTDNGSNFTSAAV
KAVCWWANIQQEFGIPYNPQSQGVVESMNKELKKIIGQVREQAEHLKTAVQMAVFIHNFK
RKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSRDPIWKGPAKLLWKGE
GAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCMAGRQDED
>HIV1Z2 P12499 POL polyprotein [Contains: Protease (Retro
FFREDLAFPQGKAGELSSEQTRANSPTSRELRVWGRDNPLSETGAERQGTVSFNCPQITL
WQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQILIE
ICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPL
TEEKIKALTEICTEMEKEGKISRVGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQD
FWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQY
NVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRTKIEELR
EHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQSIKLPEKESWTVNDIQKLVGKLNW
ASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLI
AEIQKQGHGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLAEVVQKISTESIVIWGKT
PKFRLPIQKETWETWWVEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAA
NRETKLGKAGYVTDRGRQKVVPFTDTTNQKTELQAINLALQDSGLEVNIVTDSQYALGII
QAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSQGIRKVLFLDGID
KAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCT
HLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIVHTDNGSNFTSAAV
KAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFK
RKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPIWKGPAKLLWKGE
GAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDDCVASRQDED
>HIV2CA P24107 POL polyprotein [Contains: Protease (Retro
TGGFFRDWPLGKEAPQFPRGPSSTGANTNSTPIGSSSGSTGEIYAAREKAEGAETETIQR
GDRGLTAPRTRRGPMQGDNRGLAAPQFSLWKRPVVTAHIEGQPVEVLLDTGADDSIVAGI
ELGSNYSPKIVGGIGGFINTKEYKNVEIEVLGKRVRATIMTGDTPINIFGRNILTALGMS
LNLPVAKIEPIKIMLKPGKDGPRLRQWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYN
TPTFAIRKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKRRITVLDVGDAYFS
IPLHEDFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRQVLEPFRKANSD
VIIIQYMDDILIASDRTDLEHDKVVLQLKELLNNLGFSTPDEKFQKDPPYRWMGYELWPT
KWKLQKIQLPQKEVWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTE
LAEAELEENRIILSQEQEGHYYQEEKELEATVQKDQDNQWTYKIHQEEKILKVGKYAKIK
HTHTNGVKLLAQVVQKIGKEALVIGRIPKFHLPVEREVWEQWWDNYWQVTWIPDWDFVST
PPLVRLAFNLVGDPIPGTETFYTDGSCNRQSKEGKAGYVTDRGRDKVKILEQTTNQQAEL
EAFAMALTDSGPKANIIVDSQYVMGIVAGQPTESENRIVNQIIEEMIKKEAIYVAWVPAH
KGIGGNQEVDHLVSQGIRQVLFLEKIEPAQEEHEKYHTNVKELCHKFDIPQLVARQIVNT
CAQYQQKGEAIHGQVNAEVGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTAL
FLLKLASRWPITHLHTDNGANFTSQEVKMVAWWVGIEQTFGVPYNPQSQGVVEAMNHHLK
NQISRIREQANTVETIVLMAVHCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKNSK
LKNFRVYFREGRDQLWKGPGELLWKGDGAVIVKVGTDIKIIPRRKAKIIRDYGGRQELDS
SSHLEGARENGEVA
>HIV2D1 P17757 POL polyprotein [Contains: Protease (Retro
VLELWKGGTLGETVPSTQKTGLLEVWQVRTHHGKLPGKTGRFFRDGPTGKAAPQLPRGPS
SSGADTNSTPNRSSSGPVGEIYAAREKAERAEGETIQGGDGGLTAPRAGRDAPQRGDRGL
ATPQFSLWKRPVVTAFIEDQPVEVLLDTGADDSIVAGIELGDNYTPKIVGGIGGFINTKE
YKNVEIKVLNKRVRATIMTGDTPINIFGRNILATLGMSLNLPVAKLDPIKVTLKPGKDGP
RLKQWPLTKEKIEALKEICEKMEREGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRE
LNRVTQDFTEIQLGIPHPAGLAKKKRITVLDVGDAYFSIPLHEDFRQYTAFTLPSVNNAE
PEKRYVYKVLPQGWKGSPAIFQFMMRQILEPFRKANPDVILIQYMDDILIASDRTGLEHD
KVVLQLKELLNGLGFSTPDEKFQKDPPFQWMGYELWPTKWKLQKIQLPQKEIWTVNDIQK
LVGVLNWAAQIYPGIKTKHLCKLIRGKMTLTEEVQWTELAEAELEENKIILSQEQEGSYY
QEEEELEATVIKSQDNQWAYKIHQGERVLKVGKYAKIKNTHTNGVRLLAQVVQKIGKEAL
VIWGRVPKFHLPVERDTWEQWWDNYWQVTWVPEWDFVSTPPLVRLTFNLVGDPIPGTETF
YTDGSCNRQSKEGKAGYVTDRGRDRVRVLEQTSNQQAELEAFAMALADSGPKVNIIVDSQ
YVMGIVAGQPTESENRIVNQIIEDMIKKEAVYVAWVPAHKGIGGNQEVDHLVSQGIRQVL
FLEKIEPAQEEHEKYHSNIKELTHKFGIPQLVARQIVNTCAQCQQKGEAIHGQVNAEIGV
WQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGPN
FTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAV
HCMNFKRRGGIGDMTPAERLINMITTEQEIQFLQRKNSNFKKFQVYYREGRDQLWKGPGE
LLWKGDGAVIVKVGADIKVVPRRKAKIIRDYGGRQELDSSSHLEGAREDGEVA
>HIV2G1 P18042 POL polyprotein [Contains: Protease (Retro
MWQDRTRHGKMPRKTGRFFRDGSMGKEAPQLPRGPSSSGADTNSTPSRSSSGSIGKIYAA
GERAEGAEGETIQRGDGRLTAPRAGKSTSQRGDRGLAAPQFSLWKRPVVTAYIEVQPVEV
LLDTGADDSIVAGIQLGDNYVPKIVGGIGGFINTKEIKNIEIKVLNKRVRATIMTGDTPI
NIFGRNILTALGMSLNLPIAKIEPIKVTLKPGKDGPRLRQWPLTKEKIEALREICEKMEK
EGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNRVTQDFTEIQLGIPHPAGLAKK
KRITVLDVGDAYFSIPLHEDFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQHT
MRQVLEPFRKANPDVILIQYMDDILIASDRTGLEHDKVVLQLKELLNGLGFSTPDEKFQK
DPPLQWMGYELWPTKWKLQKLQLPQKEIWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLI
KGKMTLTEEVQWTELAEAELEENKIILSQEQEGYYYQEEKELEATIQKNQDNQWTYKIHQ
EEKILKVGKYAKIKNTHTNGVRLLAQVVQKIGKEALVIWGRIPKFHLPVERETWEQWWDN
YWQVTWIPEWDFVSTPPLVRLTFNLVGDPIPGAETFYTDGSCNRQSKEGKARYVTDRGRD
KVRVLERTTNQQAELEAFAMTLTDSGPKVNIIVDSQYVMGIVVGQPTESESRIVNQIIED
MIKKEAVYVAWVPAHKGIGGNQEVDHLVSQGIRQVLFLERIEPAQEEHEKYHSNMKELTH
KFGIPQLVARQIVNTCAQCQQKGEAIHGQVNAEIGVWQMDCTHLEGKIIIVAVHVASGFI
EAEVIPQESGRQTALFLLKLASRWPITHLHTDNGSNFTSQEVKMVAWWIGIEQSFGVPYN
PQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAVHCMNFKRRGGIGDMTPAERLINMI
TTEQEIQFLQRKNSNFKNFQVYYREGRDQLWKGPGELLWKGDGAVIVKVGADIKVIPRRK
AKIIRDYGGRQELDSSHLEGAREEDGEVA
>HIV2KR Q74120 POL polyprotein [Contains: Protease (Retro
TGWFFRDWPMGKEASQLPRDPSPAGADTNSTPSRPSSRPAREVLAAREEAERAENETIQG
GDRGLTAPRTRRDTTQRGDRGFAAPQFSLWKRPVVTAYVEGQPVEVLLDTGADDSIVAGI
ELGSNYSPKIVGGIGGFINTKEYKNVEIKVLNKKVKATIMTGDTPINIFGRNILTALGMS
LNLPVAKVDPIKVILKPGKDGPKVRQWPLTKEKIEALKEICEKMEREGQLEEAPPTNPYN
TPTFAIKKKDKNKWRMLIDFRELNKVTQEFTEIQLGIPHPAGLAKKRRITVLDIGDAYFS
IPLHEDFRQYTAFTLPTVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRQVLEPFRKANPD
VILVQYMDDILIASDRTDLEHDRTVLQLKELLNGLGFSTPDEKFQKDPPYKWMGYELWPT
KWKLQKIQLPQKEVWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTE
LAEAELEENKIILSQEQEGCYYQEEKELEATVQKDQDNQWTYKIHQGEKILKVGKYAKIK
NTHTNGVRLLAHVVQKIGKEALVIWGRIPKFHLPVERETWEQWWDNYWQVTWIPDWDFVS
TPPLVRLAFNLVKDPIPGEETFYTDGSCNRQSKEGKAGYITDRGRDKVRILEQTTNQQAE
LEAFAMALTDSGPKANIIVDSQYVMGIVAGQPTESESKLVNQIIEEMIKKETLYVAWVPA
HKGIGGNQEVDHLVSQGIRQVLFLEKIEPAQEEHEKYHSNVKELSHKFGLPKLVARQIVN
TCAQCQQKGEAIHGQVDAELGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTA
LFLLKLASRWPITHLHTDNGANFTSQEVKMVAWWTGIEQSFGVPYNPQSQGVVEAMNHHL
KNQISRIREQANTMETIVLMAVHCMNFKRRGGIGDMTPAERLINMITTEQEIQFLHAKNS
KLKNFRVYFREGRDQLWKGPGELLWKGDGAVIVKVGTDIKIVPRRKAKIIRDYGGRREVD
SSSHLEGTREDGEVA
>HIV2RO P04584 POL polyprotein [Contains: Protease (Retro
TGRFFRTGPLGKEAPQLPRGPSSAGADTNSTPSGSSSGSTGEIYAAREKTERAERETIQG
SDRGLTAPRAGGDTIQGATNRGLAAPQFSLWKRPVVTAYIEGQPVEVLLDTGADDSIVAG
IELGNNYSPKIVGGIGGFINTKEYKNVEIEVLNKKVRATIMTGDTPINIFGRNILTALGM
SLNLPVAKVEPIKIMLKPGKDGPKLRQWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPY
NTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKRRITVLDVGDAYF
SIPLHEDFRPYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRQVLEPFRKANK
DVIIIQYMDDILIASDRTDLEHDRVVLQLKELLNGLGFSTPDEKFQKDPPYHWMGYELWP
TKWKLQKIQLPQKEIWTVNDIQKLVGVLNWAAQLYPGIKTKHLCRLIRGKMTLTEEVQWT
ELAEAELEENRIILSQEQEGHYYQEEKELEATVQKDQENQWTYKIHQEEKILKVGKYAKV
KNTHTNGIRLLAQVVQKIGKEALVIWGRIPKFHLPVEREIWEQWWDNYWQVTWIPDWDFV
STPPLVRLAFNLVGDPIPGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKLEQTTNQQA
ELEAFAMALTDSGPKVNIIVDSQYVMGISASQPTESESKIVNQIIEEMIKKEAIYVAWVP
AHKGIGGNQEVDHLVSQGIRQVLFLEKIEPAQEEHEKYHSNVKELSHKFGIPNLVARQIV
NSCAQCQQKGEAIHGQVNAELGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQT
ALFLLKLASRWPITHLHTDNGANFTSQEVKMVAWWIGIEQSFGVPYNPQSQGVVEAMNHH
LKNQISRIREQANTIETIVLMAIHCMNFKRRGGIGDMTPSERLINMITTEQEIQFLQAKN
SKLKDFRVYFREGRDQLWKGPGELLWKGEGAVLVKVGTDIKIIPRRKAKIIRDYGGRQEM
DSGSHLEGAREDGEMA
>HIV2SB P12451 POL polyprotein [Contains: Protease (Retro
TGWFFRAWTMGKEAPQLPRGPKFAGANTNSTPNGSSSGPTGEVHAAREKTERAETKTIQR
SDRGLAASRARRDTTQRDDRGLAAPQFSLWKRPVVTAYIEDQPVEVLLDTGADDSIVAGI
ELGSNYSPKIVGGIGGFINTKEYKDVEIRVLNKKVRATIMTGDTPINIFGRNILTALGMS
LNLPVAKIEPVKVTLKPGKDGPKQRQWPLTREKIEALREICEKMEREGQLEEAPPTNPYN
TPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEVQLGIPHPAGLAKKRRITVLDVGDAYFS
IPLYEDFRQYTAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRQVLEPFRKANPD
VIIVQYMDDILIASDRTDLEHDKVVLQLKELLNGLGFSTPDEKFQKDPPYQWMGYELWPT
KWKLQKIQLPQKEVWTVNDIQKLVGVLNWAAQIYPGIKTKHLCKLIRGKMTPTEEVQWTE
LAEAELEENKIILSQEQEGHYYQEEKELEATVQKDQDNQWTYKVHQGEKILKVGKYAKIK
NTHTNGVRLLAQVVQKIGKEALVIWGRIPKFHLPVERETWEQWWDNYWQVTWIPDWDFVS
TPPLVRLAFNLVKDPIPGAETFYTDGSCNRQSKEGKAGYITDRGKDKVRILEQTTNQQAE
LEAFAMAVTDSGPKVNIVVDSQYVMGIVTGQPAESESRIVNKIIEEMIKKEAIYVAWVPA
HKGIGGNQEIDHLVSQGIRQVLFLERIEPAQEEHGKYHSNVKELAHKFGLPNLVARQIVN
TCAQCQQKGEAIHGQVNAELGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQESGRQTA
LFLLKLASRWPITHLHTDNGANFTSQEVKMVAWWVGIEQSFGVPYNPQSQGVVEAMNHHL
KNQIERIREQANTMETIVLMAVHCMNFKRRGGIGDMTPVERLVNMITTEQEIQFLQAKNS
KLKNFRVYFREGRNQLWQGPGELLWKGDGAVIVKVGTDIKVIPRRKAKIIRDYGPRQEMD
SGSHLEGAREDGEMA
>HIV2ST P20876 POL polyprotein [Contains: Protease (Retro
KTRLLEMWQGRTHHGKMPRKTGGFFRVGPMGKEAPQFPCGPNPAGADTNSTPDRPSRGPT
REVHAAREKAERAEREAIQRSDRGLPAARETRDTMQRDDRGLAAPQFSLWKRPVVTAHVE
GQPVEVLLDTGADDSIVAGVELGSNYSPKIVGGIGGFINTKEYKNVEIRVLNKRVRATIM
TGDTPINIFGRNILTALGMSLNLPVAKIEPIKIMLKPGKDGPKLRQWPLTKEKIEALKEI
CEKMEREGQLEEAPPTNPYNTPTFAIKKKDKNKWRMLIDFRELNKVTQDFTEIQLGIPHP
AGLAKKKRITVLDVGDAYFSIPLHEDFRQYTAFTLPSINNAEPGKRYIYKVSPQGWKGSP
AIFQYTMRQVLEPFRKANPDIILIQYMDDILIASDRTDLEHDRVVLQLKELLNGLGFSTP
DEKFQKDPPYQWMGYELWPTKWKLQRIQLPQKEVWTVNDIQKLVGVLNWAAQIYPGIKTR
NLCRLIRGKMTLTEEVQWTELAEAELEENKIILSQEQEGCYYQEEKELEATVQKDQDNQW
TYKIHQGGKILKVGKYAKVKNTHTNGVRLLAQVVQKIGKEALVIWGRIPKFHLPVERDTW
EQWWDNYWQVTWIPDWDFISTPPLVRLVFNLVKDPILGAETFYTDGSCNKQSREGKAGYI
TDRGRDKVRLLEQTTNQQAELEAFAMAVTDSGPKANIIVDSQYVMGIVAGQPTESESKIV
NQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGIRQVLFLEKIEPAQEEHEKYHSN
VKELSHKFGLPKLVARQIVNTCTQCQQKGEAIHGQVNAELGTWQMDCTHLEGKIIIVAVH
VASGFIEAEVIPQESGRQTALFLLKLASRWPITHLHTDNGANFTSQEVKMVAWWIGIEQS
FGVPYNPQSQGVVEAMNHHLKNQISRIREQANTVETIVLMAVHCMNFKRRGGIGDMTPAE
RLINMVTAEQEIQFLQAKNSKLQNFRVYFREGRDQLWKGPGELLWKGDGAVIVKVGADIK
IIPRRKAKIIKDYGGRQEMDSGSNLEGAREDGEVA
>SIVCZ P17283 POL polyprotein [Contains: Protease (Retro
STKKKRLLAVWARGTPNERLHRKTGEFFRERLAFPQREARQLCAEQNRTNGPTDRELWVP
GGREEPGEERGREQSISTNLPQITLWQRPLIPVKVEGQLCEALLDTGADDTVIERIQLQG
LWKPKMIGGIGGFIKVKQFDNVHIEIEGRKVVGTVLVGPTPVNIIGRNILTQLGCTLVFP
ISSIETVPVKLKPGMDGPKVKQWPLSAEKIKALTEICQEMEKEGKISKIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSCPLD
KDFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPSIFQSSMTKILEPFREKNPDITIY
QYMDDLYVGSDLEIDQHRKKVEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTV
QPIQLPEKEVWTVNDIQKLIGKLNWASQIYPGIKIKQLCKLIRGTKKLTDVVPLTPEAEL
ELAENREIVSTPVHGVYYDPDKELIAEIQKQGNCQWTYQIFQEPHKNLKTGKYARQRSAH
TNDIRQLAEAVQKIATESIVIWGKTPKFRLPVQKESWEAWWAEYWQATWIPEWEFINTPP
LVKLWYSLETEPIPTTDTYYVDGAANRETKTGKAGYVTDKGKQKIISLENTTNQQAELKA
LLLALQDSDQQVNIVTDSQYVLGIIQSQPDHSESELVNQIIEELIKKEKIYLSWVPAHKG
IGGNEQVDKLVSAGIRKVLFLDGIDRAQEEHERYHSNWKAMASDFNLPPIVAKEIVAHCD
KCQVKGEAMHGQVDCSPGIWQVDCTHLEGKVIIVAVHVASGYIEAEVIPAETGQETAYFL
LKLAGRWPVKTIHTDNGPNFTSAAVKAACWWADIKQEFGIPYNPQSQGVVESLNKELKKI
IGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYTAGERIIDIIATDIQTSELQKQILKVQ
KFRVYYRDSRDPIWKGPATLLWKGEGAVVIQDQGELKVVPRRKAKIIRDYGKQMAGDDCV
ASRQNED
>Smanga_S4 P12502 POL polyprotein [Contains: Protease (Retro
KTGGFFRAWPMGKEAPQFPHGPDASGADTNCSPRGSSCGSTEELHEDGQKAEGEQRETLQ
GGDRGFAAPQFSLWRRPVVTAYIEEQPVEVLLDTGADDSIVAGIELGPNYTPKIVGGIGG
FINTKEYKDVKIKVLGKVIKGTIMTGDTPINIFGRNLLTAMGMSLNLPIAKVEPIKVTLK
PGKEGPKLRQWPLSKEKIIALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNKWRM
LIDFRELNKVTQDFTEVQLGIPHPAGLAKRRRITVLDVGDAYFSIPLDEEFRQYTAFTLP
SVNNAEPGKRYIYKVLPQGWKGSPAIFQYTMRNVLEPFRKANPDVTLIQYMDDILIASDR
TDLEHDRVVLQLKELLNGIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQRETWT
VNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEENKIILSQE
QEGCYYQEGKPIEATVIKSQDNQWSYKIHQEDKVLKVGKFAKVKNTHTNGVRLLAHVVQK
IGKEALVIWGEVPKFHLPVEREIWEQWWTDYWQVTWIPDWDFVSTPPLVRLVFNLVKEPI
QGAETFYVDGSCNRQSREGKAGYVTDRGRDKAKLLEQTTNQQAELEAFYLALADSGPKAN
IIVDSQYVMGIIAGQPTESESRLVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQ
GIRQVLFLKKIEPAQEEHEKYHSNVKELVFKFGLPRLVAKQIVDTCDKCHQKGEAIHGQV
NAELGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLAGRWPITHLH
TDNGANFTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANSIET
IVLMAVHCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGRDQL
WKGPGELLWKGEGAVILKVGTEIKVVPRRKAKIIKDYGGGKELDSGSHLEDTGEAREVA
>Smanga_SP P19505 POL polyprotein [Contains: Protease (Retro
MPRKTSGFFRAWPMGKEAPQFPHGPDASGADTNCSPRGSSCGSTEELHEDGQKAEGEQRE
TLQGGNGGFAAPQFSLWRRPIVTAYIEEQPVEVLLDTGADDSIVAGIELGPNYTPKIVGG
IGGFINTKEYKDVKIKVLGKVIKGTIMTGDTPINIFGRNLLTAMGMSLNLPIAKVEPIKV
TLKPGKDGPKLRQWPLSKEKIIALREICEKMEKDGQLEEAPPTNPYNTPTFAIKKKDKNK
WRMLIDFRELNKVTQDFTEVQLGIPHPAGLAKRRRITVLDVGDAYFSIPLDEEFRQYTAF
TLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRNVLEPFRKANPDVTLIQYMDDILIA
SDRTDLEHDRVVLQLKELLNSIGFSTPEEKFQKDPPFQWMGYELWPTKWKLQKIELPQRE
TWTVNDIQKLVGVLNWAAQIYPGIKTKHLCRLIRGKMTLTEEVQWTEMAEAEYEENKIIL
SQEQEGCYYQEGKPLEATVIKSQDNQWSYKIHQEDKILKVGKFAKIKNTHTNGVRLLAHV
VQKIGKEAIVIWGQVPRFHLPVEREIWEQWWTDYWQVTWIPEWDFVSTPPLVRLVFNLVK
EPIQGAETFYVDGSCNRQSREGKAGYVTDRGRDKAKLLEQTTNQQAELEAFYLALADSGP
KANIIVDSQYVMGIVAGQPTESESRLVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHL
VSQGIRQVLFLEKIEPAQEEHEKYHSNVKELVFKFGLPRLVAKQIVDTCDKCHQKGEAIH
GQVNAELGTWQMDCTHLEGKIIIVAVHVASGFIEAEVIPQETGRQTALFLLKLASRWPIT
HLHTDNGANFTSQEVKMVAWWAGIEQTFGVPYNPQSQGVVEAMNHHLKTQIDRIREQANS
IETIVLMAVHCMNFKRRGGIGDMTPAERLVNMITTEQEIQFQQSKNSKFKNFRVYYREGR
DQLWKGPGELLWKGEGAVILKVGTEIKVVPRRKAKIIKDYGGGKELDSGSHLEDTGEARE
VA