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2014 (4) 2013 (2) 2012 (1) 2011 (3) 2010 (1) 2005 (2) 2004 and before (6)

2014

    Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes.
    Nielsen HB, Almeida M, Juncker AS, Rasmussen S, Li J, Sunagawa S, Plichta DR, Gautier L, Pedersen AG, Le Chatelier E, Pelletier E, Bonde I, Nielsen T, Manichanh C, Arumugam M, Batto JM, Quintanilha Dos Santos MB, Blom N, Borruel N, Burgdorf KS, Boumezbeur F, Casellas F, Doré J, Dworzynski P, Guarner F, Hansen T, Hildebrand F, Kaas RS, Kennedy S, Kristiansen K, Kultima JR, Léonard P, Levenez F, Lund O, Moumen B, Le Paslier D, Pons N, Pedersen O, Prifti E, Qin J, Raes J, Sørensen S, Tap J, Tims S, Ussery DW, Yamada T; MetaHIT Consortium, Renault P, Sicheritz-Ponten T, Bork P, Wang J, Brunak S, Ehrlich SD Nat Biotechnol
    Nature Biotechnology. 2014 Jul 6., 2014
    PubMed
    Genomic profiling of thousands of candidate polymorphisms predicts risk of relapse in 778 Danish and German childhood acute lymphoblastic leukemia patients.
    Wesolowska A, Borst L, Dalgaard MD, Yadav R, Rasmussen KK, Wehner PS, Rasmussen M, Orntoft TF, Nordentoft I, Koehler R, Bartram CR, Schrappe M, Sicheritz-Ponten T, Gautier L, Marquart H, Madsen HO, Brunak S, Stanulla M, Gupta R, Schmiegelow K
    Leukemia. 2014 Jul 3., 2014
    PubMed
    Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
    Nielsen HB, Almeida M, Juncker AS, Rasmussen S, Li J, Sunagawa S, Plichta DR, Gautier L, Pedersen AG, Le Chatelier E, Pelletier E, Bonde I, Nielsen T, Manichanh C, Arumugam M, Batto JM, Quintanilha Dos Santos M, Blom N, Borruel N, Burgdorf KS, Boumezbeur F, Casellas F, Doré J, Dworzynski P, Guarner F, Hansen T, Hildebrand F, Kaas RS, Kennedy S, Kristiansen K, Kultima JR, Léonard P, Levenez F, Lund O, Moumen B, Le Paslier D, Pons N, Pedersen O, Prifti E, Qin J, Raes J, Sørensen S, Tap J, Tims S, Ussery DW, Yamada T, Renault P, Sicheritz-Ponten T, Bork P, Wang J, Brunak S, Ehrlich SD
    Nature Biotechnology, 2014
    PubMed
    Towards in vivo regulon kinetics: PurR activation by PRPP during purine depletion in Lactococcus lactis
    Jendresen CB, Dimitrov P, Gautier L, Lui M, Martinussen J, Kilstrup M
    Microbiology. 2014 Jul;160(Pt 7):1321-31, 2014
    PubMed

2013

    Low-bandwidth and non-compute intensive remote identification of microbes from raw sequencing reads.
    Gautier L, Lund O
    PLoS One. 2013 Dec 31;8(12):e83784, 2013
    PubMed
    The effect of network biology on drug toxicology
    Gautier L, Taboureau O, Audouze K
    Expert Opinion on Drug Metabolism & Toxicology 9(11):1409-18 doi:10.1517/17425255.2013.820704, 2013
    PubMed

2012

    TLR2 Controls Intestinal Carcinogen Detoxication by CYP1A1
    Do KN, Fink LN, Jensen TE, Gautier L, Parlesak A
    PLoS ONE 7(3): e32309. doi:10.1371/journal.pone.0032309, 2012

2011

    Cost-effective multiplexing before capture allows screening of 25 000 clinically relevant SNPs in childhood acute lymphoblastic leukemia
    Wesolowska A, Dalgaard MD, Borst L, Gautier L, Bak M, Weinhold N, Nielsen BF, Helt LR, Audouze K, Nersting J, Tommerup N, Brunak S, Sicheritz-Ponten T, Leffers H, Schmiegelow K, Gupta R
    Leukemia 25(6):1001-6 doi:10.1038/leu.2011.32, 2011
    PubMed
    Cancer stem cell overexpression of nicotinamide N-methyltransferase enhances
    D’Andrea FP, Safwat A, Kassem M, Gautier L, Overgaard J
    Radiotherapy and Oncology, May 13, 2011
    Enterotypes of the human gut microbiome
    Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto JM, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, Hansen T, Hattori M, Hayashi T, Kleerebezem M, Kurokawa K, Leclerc M, Levenez F, Manichanh C, Nielsen HB, Nielsen T, Pons N, Poulain J, Qin J, Sicheritz-Ponten T, Tims S, Torrents D, Ugarte E, Zoetendal EG, Wang J, Guarner F, Pedersen O, de Vos WM, Brunak S, Doré J; MetaHIT Consortium, Antolín M, Artiguenave F, Blottiere HM, Almeida M, Brechot C, Cara C, Chervaux C, Cultrone A, Delorme C, Denariaz G, Dervyn R, Foerstner KU, Friss C, van de Guchte M, Guedon E, Haimet F, Huber W, van Hylckama-Vlieg J, Jamet A, Juste C, Kaci G, Knol J, Lakhdari O, Layec S, Le Roux K, Maguin E, Mérieux A, Melo Minardi R, M\'rini C, Muller J, Oozeer R, Parkhill J, Renault P, Rescigno M, Sanchez N, Sunagawa S, Torrejon A, Turner K, Vandemeulebrouck G, Varela E, Winogradsky Y, Zeller G, Weissenbach J, Ehrlich SD, Bork P
    Nature 473(7346):174-80 doi:10.1038/nature09944, 2011
    PubMed

2010

    An intuitive Python interface for Bioconductor libraries demonstrates the utility of language translators
    Gautier L
    BMC Bioinformatics, 2010

2005

    Preprocessing High-density Oligonucleotide Arrays
    Bolstad B, Irizarry R, Gautier L, Wu Z
    Statistics for Biology and Health, Springer, 2005
    Relevant URL
    Implementation of a gene expression index cal-culation method based on the PDNN model
    Nielsen HB, Gautier L, Knudsen S
    Bioinformatics 21(5):687-8, 2005
    PubMed

2004

    Alternative mapping of probes to genes for affymetrix chips
    Gautier L, Møller M, Friis-Hansen L, Knudsen L
    BMC Bioinformatics 5:111, 2004
    PubMed
    Relevant URL
    Integrative Approaches to the Analysis of Microarrays Expression Data: Application to High-density nucleotide Arrays
    Gautier L
    Ph.D. thesis, 2004
    Implementation of a gene expression index calculatation method based on the PDNN model
    Bjørn Nielsen H, Gautier L, Knudsen S
    Bioinformatics 21(5):687-8, 2004
    PubMed
    affy--analysis of Affymetrix GeneChip data at the probe level
    Gautier L, Cope L, Bolstad BM, Irizarry RA
    Bioinformatics 20(3):307-15, 2004
    PubMed

2003

    An R Package for Analyses of Affymetrix Oligonucleotide Arrays
    Irizarry R, Gautier L, Cope L
    Springer, Statistics for Biology and Health, 2003
    Relevant URL

2002

    A new non-linear normalization method for reducing variability in DNA microarray experiments
    Workman C, Jensen LJ, Jarmer H, Berka R, Gautier L, Nielsen HB, Saxild HH, Nielsen C, Brunak S, Knudsen S
    Genome Biol. 3(9):research0048, 2002
    PubMed

2014 (4) 2013 (2) 2012 (1) 2011 (3) 2010 (1) 2005 (2) 2004 and before (6)