Events News Research CBS CBS Publications Bioinformatics
Staff Contact About Internal CBS CBS Other

2012 (3) 2011 (1) 2010 (2) 2009 (1) 2008 (1) 2007 (2) 2006 and before (8) Books (1)

2012

    snpTree-a web-server to identify and construct SNP trees from whole genome sequence data
    Leekitcharoenphon P, Kaas RS, Thomsen MCF, Friis C, Rasmussen S, Aarestrup FM
    BMC Genomics 13 (Suppl 7), S6, 2012
    PubMed
    Multilocus Sequence Typing of Total Genome Sequenced Bacteria
    Larsen MV, Cosentino S, Rasmussen S, Friis C, Hasman H et al
    J. Clin. Micobiol. 2012. 50(4): 1355-1361., 2012
    Genomic variation in Salmonella enterica core genes for epidemiological typing
    Leekitcharoenphon P, Lukjancenko O, Friis C, Aarestrup FM, Ussery DW
    BMC Genomics 2012, 13:88, 2012
    pubmed link

2011

    The Salmonella enterica Pan-genome
    Jacobsen A, Hendriksen RS, Aaresturp FM, Ussery DW, Friis C
    Microb Ecol, June 4, 2011
    PubMed

2010

    Proteome analysis of pod and seed development in the model legume Lotus japonicus
    Nautrup-Pedersen G, Dam S, Laursen BS, Siegumfeldt AL, Nielsen K, Goffard N, Stærfeldt HH, Friis C, Sato S, Tabata S, Lorentzen A, Roepstorff P, Stougaard J
    J Proteome Res, November 5, 2010
    PubMed
    Genomic Characterization of Campylobacter jejuni strain M1
    Friis C, Wassenaar T, Javed M, Snipen L, Lagesen K, Hallin P, Newell D, Toszeghy M, RIdley A, Manning G, Ussery D
    PLoS ONE, 2010
    PubMed

2009

    The proteome of seed development in the model legume Lotus japonicus.
    Dam S, Laursen BS, Ornfelt JH, Jochimsen B, Stærfeldt HH, Friis C, Nielsen K, Goffard N, Besenbacher S, Krusell L, Sato S, Tabata S, Thogersen IB, Enghild JJ, Stougaard J
    Plant Physiology, 2009, 7 January, 2009
    PubMed

2008

    A pathway-specific microarray analysis highlights the complex and co-ordinated transcriptional networks of the developing grain of field-grown barley
    Hansen M, Friis C, Bowra S, Holm PB, Vincze E
    Journal of Experimental Botany, doi:10.1093/jxb/ern270, 2008
    PubMed
    Relevant URL

2007

    Antisense-mediated suppression of C-hordein biosynthesis in the barley grain results in correlated changes in the transcriptome, protein profile, and amino acid composition
    Hansen M, Lange M, Friis C, Dionisio G, Holm PB, Vincze E
    Journal of Experimental Botany 2007 58(14):3987-3995; doi:10.1093/jxb/erm254, 2007
    PubMed
    Motif decomposition of the phosphotyrosine proteome reveals a new N-terminal binding motif for SHIP2
    Miller ML, Hanke S, Hinsby AM, Friis C, Brunak S, Mann M, Blom N
    Mol Cell Proteomics (in press), 2007
    PubMed

2006

    An environmental signature for 323 microbial genomes based on codon adaptation indices
    Willenbrock H, Friis C, Juncker AS, Ussery DW
    Genome Biology, 7, R114, 2006
    PubMed

2004

    Transcriptional profiling of extracellular amino acid in Saccharomyces cerevisiae and the role of St1p and Stp2p
    Eckert-Boulet N, Nielsen PS, Friis C, dos Santos MM, Nielsen J, Kielland-Brandt MC, Regenberg B
    Yeast, 21, 634-48, 2004
    PubMed

2003

    Analysis of Gene Expression and Regulatory Networks
    Friis C
    Ph.D. thesis, 2003
    GenePublisher: Automated analysis of DNA microarray data
    Knudsen S, Workman C, Sicheritz-Ponten T, Friis C
    Nucleic Acids Res, 31, 3471-76, 2003
    PubMed

2002

    The Atlas Visualisation of Genome-wide Information
    Skovgaard M, Jensen LJ, Friis C, Stærfeldt H-H, Worning P, Brunak S, Ussery D
    Methods in Microbiology, 33, 49-63, 2002

2001

    Genome Organisation and Chromatin Structure in Escherichia coli
    Ussery D, Larsen TS, Wilkes KT, Friis C, Worning P, Krogh A, Brunak S
    Biochimie, 83, 202-212 (cover illustration), 2001
    PubMed

2000

    Visualization of pathogenicity regions in bacteria
    Friis C, Jensen LJ, Ussery DW
    Genetica, 108, 47-51, 2000
    PubMed

1999

    Three views of microbial genomes
    Jensen LJ, Friis C, Ussery DW
    Res. Microbiol., 150, 773-777, 1999
    PubMed


Books

    Comparative Genomics of Pseudomonas
    Kiil K, Binnewies TT, Willenbrock H, Hansen SK, Yang L, Jelsbak L, Ussery DW, Friis C
    Chapter 1 in Pseudomonas: Model Organism, Pathogen, Cell Factory, (Edited by: B. H. A. Rehm, Wiley-VCH, 2008), 2008
    Link to publisher

2012 (3) 2011 (1) 2010 (2) 2009 (1) 2008 (1) 2007 (2) 2006 and before (8) Books (1)