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2012
Bayesian prediction of bacterial optimum temperature based on genome sequences
Jensen DB, Vest TC, Hallin PF, Pedersen AG, Ussery D
BMC Genomics, 2012 |
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2010
Plasmodium falciparum Erythrocyte Membrane Protein 1 Diversity in Seven Genomes – Divide and Conquer
Rask TS, Hansen DA, Theander TG, Pedersen AG, Lavstsen T
PLoS Computational Biology, 2010 |
PubMed
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2009
Higher variability in the number of sexual partners in males can contribute to a higher prevalence of sexually transmitted diseases in females
Gouveia-Oliveira R, Pedersen AG
Journal of Theoretical Biology, 261:100-106, 2009 |
PubMed
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InterMap3D: predicting and visualizing co-evolving protein residues
Gouveia-Oliveira R, Roque FS, Wernersson R, Sicheritz-Ponten T, Sackett PW, Mølgaard A, Pedersen AG
Bioinformatics, 2009 |
PubMed
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Evolution of the leukotoxin promoter in genus Mannheimia
Larsen J, Pedersen AG, Davies R, Kuhnert P, Frey J, Christensen H, Bisgaard M, Olsen J
BMC Evolutionary Biology, 2009 |
PubMed
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2007
Finding Coevolving Amino acid Residues using Row and Column Weighing of Mutual Information and Multi-Dimensional Amino acid Representation
Gouveia-Oliveira R, Pedersen AG
Algorithms in Molecular Biology, 3;2(1):12, 2007 |
PubMed
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MaxAlign: maximizing usable data in an alignment
Gouveia-Oliveira R, Sackett PW, Pedersen AG
BMC Bioinformatics. Aug 28;8(1):312, 2007 |
PubMed
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Evidence for Vertical Inheritance and Loss of the Leukotoxin Operon in Genus Mannheimia
Larsen J, Pedersen AG, Christensen H, Bisgaard M, Angen Ø, Ahrens P, Olsen JE
J. Mol. Evol., 64(4):423-37, 2007 |
PubMed
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A human phenome-interactome network of protein complexes implicated in genetic disorders
Lage K, Karlberg EO, Storling ZM, Olason PI, Pedersen AG, Rigina O, Hinsby AM, Tumer Z, Pociot F, Tommerup N, Moreau Y, Brunak S
Nature Biotechnol., 25 (3), 309-16, 2007 |
PubMed
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Identification of a novel Mannheimia granulomatis lineage from pathological lesions in roe deer (Capreolus capreolus)
Bojesen AM, Larsen J, Pedersen AG, Mörner T, Mattson R, Bisgaard M
J. Wildlife Dis., 43(3), 345-352, 2007 |
PubMed
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Investigating Signs of Recent Evolution in the Pool of Pro-viral DNA during Years of Successful HAART
Mens H, Pedersen AG, Jørgensen LB, Hue S, Gerstoft J, Katzenstein TL
AIDS Res. Hum. Retroviruses, 23 (1), 107-115, 2007 |
PubMed
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2006
Epitope mapping and topographic analysis of VAR2CSA DBL3X involved in P. falciparum placental sequestration
Dahlbäck M, Rask TS, Andersen PH, Nielsen MA, Ndam NT, Resende M, Turner L, Deloron P, Lund O, Pedersen AG, Hviid L, Theander TG, Salanti A
PLoS Pathogens, 2 (11):e124, 2006 |
PubMed
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Protein Evolution is Faster Outside the Cell
Julenius K, Pedersen AG
Mol. Biol. Evol., 23 (11), 2039-2048, 2006 |
PubMed
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Identification of Tn5397-like and Tn916-like transposons and diversity of the tetracycline resistance gene tet(M) in enterococci from humans, pigs and poultry
Agersø Y, Pedersen AG, Aarestrup FM
Journal of Antimicrobial Chemotherapy, 57, 832-839, 2006 |
PubMed
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2005
Genetic evolution of HIV in patients remaining on a stable HAART regimen despite insufficient viral suppression
Kristiansen TB, Pedersen AG, Eugen-Olsen J, Katzenstein TL, Lundgren JD
Scand J Infect Dis, 37, 890-901, 2005 |
PubMed
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Limited Inter- and Intra-patient Sequence Diversity of the Genetic Lineage A human metapneumovirus fusion gene
Winther TN, Madsen CD, Pedersen AG, von Linstow ML, Eugen-Olsen J, Hogh B
Virus Genes, 31, 89-97, 2005 |
PubMed
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Characterization of rotavirus strains in a Danish population: high frequency of mixed infections and diversity within the VP4 gene of P [8] strains
Fischer TK, Eugen-Olsen J, Pedersen AG, Molbak K, Bottiger B, Rostgaard K, Nielsen NM
J Clin Microbiol, 43, 1099-104, 2005 |
PubMed
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2004
Definition of supertypes for HLA molecules using clustering of specificity matrices
Lund O, Nielsen M, Kesmir C, Pedersen AG, Lundegaard C, Worning P, Sylvester-Hvid C, Lamberth K, Roder G, Justesen S, Buus S, Brunak S
Immunogenetics, 55, 797-810, 2004 |
PubMed
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2003
Characterization of incompletely typed rotavirus strains from Guinea-Bissau: identification of G8 and G9 types and a high frequency of mixed infections
Fischer TK, Page NA, Griffin DD, Eugen-Olsen J, Pedersen AG, Valentiner-Branth P, Mølbak K, Sommerfelt H, Nielsen NM
Virology, 311, 125-33, 2003 |
PubMed
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RevTrans: multiple alignment of coding DNA from aligned amino acid sequences
Wernersson R, Pedersen AG
Nucleic Acids Res., 31, 3537-9, 2003 |
PubMed
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2001
Flexibility of the genetic code with respect to DNA structure
Baisnee PF, Baldi P, Brunak S, Pedersen AG
Bioinformatics, 17, 237-248, 2001 |
PubMed
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ISMB2001 - Proceedings for the Ninth international Conference on Intelligent Systems for Molecular Biology
Brunak S, Gallison F, Gribskov M, Krogh A, Pedersen AG, Rouze P, Stormo G, Tramontano A (eds.)
Bioinformatics, 17, Suppl. 1, 2001 |
TOC
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2000
A DNA structural atlas for Escherichia coli
Pedersen AG, Jensen LJ, Stærfeldt H, Brunak S, Ussery DW
J. Mol.Biol., 299, 907-930, 2000 |
PubMed
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1999
Structural Basis for Triplet Repeat Disorders: A Computational Analysis
Baldi P, Brunak S, Chauvin Y, Pedersen AG
Bioinformatics, 15, 918-929, 1999 |
PubMed
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The biology of eukaryotic promoter prediction - a review
Pedersen AG, Baldi P, Chauvin Y, Brunak S
Comp Chem, 23, 191-207, 1999 |
PubMed
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1998
DNA Structure in Human RNA Polymerase II Promoters
Pedersen AG, Baldi P, Chauvin Y, Brunak S
J. Mol. Biol., 281, 663-673, 1998 |
PubMed
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Computational analyses and annotations of the Arabidopsis peroxidase gene family
Østergaard L, Pedersen AG, Jespersen HM, Brunak S, Welinder KG
FEBS Letters, 433, 98-102, 1998 |
PubMed
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Computational Applications of DNA Structural Scales
Baldi P, Brunak S, Chauvin Y, Gorodkin J, Pedersen AG
Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology (ISMB98), 35-42, 1998 |
PubMed
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1997
Neural Network Prediction of Translation Initiation Sites in Eukaryotes: Perspectives for EST and Genome analysis
Pedersen AG, Nielsen H
Proceedings of the Fifth International Conference on Intelligent Systems for Molecular Biology (ISMB97), 226-233, 1997 |
PubMed
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1996
Characterization of Prokaryotic and Eukaryotic Promoters Using Hidden Markov Models
Pedersen AG, Baldi P, Brunak S, Chauvin Y
Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology (ISMB96), 182-191, 1996 |
PubMed
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1995
Investigations of Escherichia coli promoter sequences with artificial neural networks: New signals discovered upstream of the transcriptional startpoint
Pedersen AG, Engelbrecht J
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology (ISMB95), AAAI Press, 292-299, 1995 |
PubMed
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This file was last modified Friday 3rd of September 2010 09:03:29 GMT |
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