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2014 (1) 2012 (1) 2010 (1) 2009 (3) 2007 (6) 2006 (3) 2005 and before (17)

2014

    DNA secondary structures are associated with recombination in major Plasmodium falciparum variable surface antigen gene families
    Sander AF, Lavstsen T, Rask TS, Lisby M, Salanti A, Fordyce SL, Jespersen JS, Carter R, Deitsch KW, Theander TG, Pedersen AG, Arnot DE
    Nucleic Acids Research, 2014
    PubMed
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2012

    Bayesian prediction of bacterial growth temperature range based on genome sequences
    Jensen DB, Vest TC, Hallin PF, Pedersen AG, Ussery D
    BMC Genomics, 2012
    PubMed
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2010

    Plasmodium falciparum Erythrocyte Membrane Protein 1 Diversity in Seven Genomes – Divide and Conquer
    Rask TS, Hansen DA, Theander TG, Pedersen AG, Lavstsen T
    PLoS Comput. Biol. 6(9) doi:10.1371/journal.pcbi.1000933, 2010
    PubMed
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2009

    Higher variability in the number of sexual partners in males can contribute to a higher prevalence of sexually transmitted diseases in females
    Gouveia-Oliveira R, Pedersen AG
    J. Theor. Biol. 261(1):100-6 doi:10.1016/j.jtbi.2009.06.028, 2009
    PubMed
    InterMap3D: predicting and visualizing co-evolving protein residues
    Gouveia-Oliveira R, Roque FS, Wernersson R, Sicheritz-Ponten T, Sackett PW, Mølgaard A, Pedersen AG
    Bioinformatics 25(15):1963-5 doi:10.1093/bioinformatics/btp335, 2009
    PubMed
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    Evolution of the leukotoxin promoter in genus Mannheimia
    Larsen J, Pedersen AG, Davies R, Kuhnert P, Frey J, Christensen H, Bisgaard M, Olsen J
    BMC Evol. Biol. 9:121 doi:10.1186/1471-2148-9-121, 2009
    PubMed
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2007

    Finding Coevolving Amino acid Residues using Row and Column Weighing of Mutual Information and Multi-Dimensional Amino acid Representation
    Gouveia-Oliveira R, Pedersen AG
    Algorithms Mol Biol 2:12, 2007
    PubMed
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    MaxAlign: maximizing usable data in an alignment
    Gouveia-Oliveira R, Sackett PW, Pedersen AG
    BMC Bioinformatics 8:312, 2007
    PubMed
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    Evidence for Vertical Inheritance and Loss of the Leukotoxin Operon in Genus Mannheimia
    Larsen J, Pedersen AG, Christensen H, Bisgaard M, Angen Ø, Ahrens P, Olsen JE
    J. Mol. Evol. 64(4):423-37, 2007
    PubMed
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    A human phenome-interactome network of protein complexes implicated in genetic disorders
    Lage K, Karlberg EO, Storling ZM, Olason PI, Pedersen AG, Rigina O, Hinsby AM, Tumer Z, Pociot F, Tommerup N, Moreau Y, Brunak S
    Nat. Biotechnol. 25(3):309-16, 2007
    PubMed
    Identification of a novel Mannheimia granulomatis lineage from pathological lesions in roe deer (Capreolus capreolus)
    Bojesen AM, Larsen J, Pedersen AG, Mörner T, Mattson R, Bisgaard M
    J. Wildl. Dis. 43(3):345-52, 2007
    PubMed
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    Investigating Signs of Recent Evolution in the Pool of Pro-viral DNA during Years of Successful HAART
    Mens H, Pedersen AG, Jørgensen LB, Hue S, Gerstoft J, Katzenstein TL
    AIDS Res. Hum. Retroviruses 23(1):107-15, 2007
    PubMed
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2006

    Epitope mapping and topographic analysis of VAR2CSA DBL3X involved in P. falciparum placental sequestration
    Dahlbäck M, Rask TS, Andersen PH, Nielsen MA, Ndam NT, Resende M, Turner L, Deloron P, Lund O, Pedersen AG, Hviid L, Theander TG, Salanti A
    PLoS Pathog. 2(11):e124, 2006
    PubMed
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    Protein Evolution is Faster Outside the Cell
    Julenius K, Pedersen AG
    Mol. Biol. Evol. 23(11):2039-48, 2006
    PubMed
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    Identification of Tn5397-like and Tn916-like transposons and diversity of the tetracycline resistance gene tet(M) in enterococci from humans, pigs and poultry
    Agersø Y, Pedersen AG, Aarestrup FM
    J. Antimicrob. Chemother. 57(5):832-9, 2006
    PubMed
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2005

    Genetic evolution of HIV in patients remaining on a stable HAART regimen despite insufficient viral suppression
    Kristiansen TB, Pedersen AG, Eugen-Olsen J, Katzenstein TL, Lundgren JD
    Scand. J. Infect. Dis. 37:890-901, 2005
    PubMed
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    Limited Inter- and Intra-patient Sequence Diversity of the Genetic Lineage A human metapneumovirus fusion gene
    Winther TN, Madsen CD, Pedersen AG, von Linstow ML, Eugen-Olsen J, Hogh B
    Virus Genes 31(1):89-97, 2005
    PubMed
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    Characterization of rotavirus strains in a Danish population: high frequency of mixed infections and diversity within the VP4 gene of P [8] strains
    Fischer TK, Eugen-Olsen J, Pedersen AG, Molbak K, Bottiger B, Rostgaard K, Nielsen NM
    J. Clin. Microbiol. 43(3):1099-104, 2005
    PubMed
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2004

    Definition of supertypes for HLA molecules using clustering of specificity matrices
    Lund O, Nielsen M, Kesmir C, Pedersen AG, Lundegaard C, Worning P, Sylvester-Hvid C, Lamberth K, Roder G, Justesen S, Buus S, Brunak S
    Immunogenetics 55(12):797-810, 2004
    PubMed

2003

    Characterization of incompletely typed rotavirus strains from Guinea-Bissau: identification of G8 and G9 types and a high frequency of mixed infections
    Fischer TK, Page NA, Griffin DD, Eugen-Olsen J, Pedersen AG, Valentiner-Branth P, Mølbak K, Sommerfelt H, Nielsen NM
    Virology 311(1):125-33, 2003
    PubMed
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    RevTrans: multiple alignment of coding DNA from aligned amino acid sequences
    Wernersson R, Pedersen AG
    Nucleic Acids Res. 31(13):3537-9, 2003
    PubMed
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2001

    Flexibility of the genetic code with respect to DNA structure
    Baisnee PF, Baldi P, Brunak S, Pedersen AG
    Bioinformatics 17(3):237-48, 2001
    PubMed
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    ISMB2001 - Proceedings for the Ninth international Conference on Intelligent Systems for Molecular Biology
    Brunak S, Gallison F, Gribskov M, Krogh A, Pedersen AG, Rouze P, Stormo G, Tramontano A (eds.)
    Bioinformatics, 17, Suppl. 1, 2001
    TOC

2000

    A DNA structural atlas for Escherichia coli
    Pedersen AG, Jensen LJ, Stærfeldt H, Brunak S, Ussery DW
    J. Mol. Biol. 299(4):907-30, 2000
    PubMed
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1999

    Structural Basis for Triplet Repeat Disorders: A Computational Analysis
    Baldi P, Brunak S, Chauvin Y, Pedersen AG
    Bioinformatics 15(11):918-29, 1999
    PubMed
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    The biology of eukaryotic promoter prediction - a review
    Pedersen AG, Baldi P, Chauvin Y, Brunak S
    Comput. Chem. 23:191-207, 1999
    PubMed
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1998

    DNA Structure in Human RNA Polymerase II Promoters
    Pedersen AG, Baldi P, Chauvin Y, Brunak S
    J. Mol. Biol. 281(4):663-73, 1998
    PubMed
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    Computational analyses and annotations of the Arabidopsis peroxidase gene family
    Østergaard L, Pedersen AG, Jespersen HM, Brunak S, Welinder KG
    FEBS Lett. 433:98-102, 1998
    PubMed
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    Computational Applications of DNA Structural Scales
    Baldi P, Brunak S, Chauvin Y, Gorodkin J, Pedersen AG
    Proc Int Conf Intell Syst Mol Biol 6:35-42, 1998
    PubMed
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1997

    Neural Network Prediction of Translation Initiation Sites in Eukaryotes: Perspectives for EST and Genome analysis
    Pedersen AG, Nielsen H
    Proc Int Conf Intell Syst Mol Biol 5:226-33, 1997
    PubMed
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1996

    Characterization of Prokaryotic and Eukaryotic Promoters Using Hidden Markov Models
    Pedersen AG, Baldi P, Brunak S, Chauvin Y
    Proc Int Conf Intell Syst Mol Biol 4:182-91, 1996
    PubMed
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1995

    Investigations of Escherichia coli promoter sequences with artificial neural networks: New signals discovered upstream of the transcriptional startpoint
    Pedersen AG, Engelbrecht J
    Proc Int Conf Intell Syst Mol Biol 3:292-9, 1995
    PubMed
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2014 (1) 2012 (1) 2010 (1) 2009 (3) 2007 (6) 2006 (3) 2005 and before (17)