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2007 (2) 2005 (1) 2001 (1) 1999 (2) 1998 (1) 1997 (4)

2007

    SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation
    Panitz F, Stengaard H, Hornshøj H, Gorodkin J, Hedegaard J, Cirera S, Thomsen B, Madsen LB, Høj A, Vingborg RK, Zahn B, Wang X, Wang X, Wernersson R, Jørgensen CB, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Brunak S, Fredholm M, Bendixen C
    Bioinformatics 23(13):i387-91, 2007
    PubMed
    Web
    Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags
    Gorodkin J, Cirera S, Hedegaard J, Gilchrist MJ, Panitz F, Jørgensen C, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Rosenkilde C, Wang J, Li H, Li R, Liu B, Hu S, Dong W, Li W, Yu J, Wang J, Staerfeldt HH, Wernersson R, Madsen LB, Thomsen B, Hornshøj H, Bujie Z, Wang X, Wang X, Bolund L, Brunak S, Yang H, Bendixen C, Fredholm M
    Genome Biol. 8(4):R45, 2007
    PubMed
    Web

2005

    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L
    BMC Genomics 6:70, 2005
    PubMed

2001

    Recognition of environmental and genetic effects on barley phenolic fingerprints by neural networks
    Gorodkin J, Sogaard B, Bay H, Doll H, Kolster P, Brunak S
    Comput. Chem. 25(3):301-7, 2001
    PubMed

1999

    MatrixPlot: visualizing sequence constraints
    Gorodkin J, Stærfeldt HH, Lund O, Brunak S
    Bioinformatics 15(9):769-70, 1999
    PubMed
    Using Sequence Motifs for Enhanced Neural Network Prediction of Protein Distance Constraints
    Gorodkin J, Lund O, Andersen CA, Brunak S
    Proc Int Conf Intell Syst Mol Biol:95-105, 1999
    PubMed

1998

    Computational Applications of DNA Structural Scales
    Baldi P, Brunak S, Chauvin Y, Gorodkin J, Pedersen AG
    Proc Int Conf Intell Syst Mol Biol 6:35-42, 1998
    PubMed
    Publication download

1997

    Displaying the information contents of structural RNA alignments: the structure logos
    Gorodkin J, Heyer LJ, Brunak S, Stormo GD
    Comput. Appl. Biosci. 13(6):583-6, 1997
    PubMed
    Finding the most significant common sequences and structure motifs in a set of RNA sequences
    Gorodkin J, Heyer LJ, Stormo GD
    Nucleic Acids Res. 25(18):3724-32, 1997
    PubMed
    Protein distance constraints predicted by neural networks and probability density functions
    Lund O, Frimand K, Gorodkin J, Bohr H, Bohr J, Hansen J, Brunak S
    Protein Eng. 10(11):1241-8, 1997
    PubMed
    Finding Common Sequence and Structure Motifs in a Set of RNA Sequences
    Gorodkin J, Heyer LJ, Stormo G
    Proc Int Conf Intell Syst Mol Biol 5:120-3, 1997
    PubMed

2007 (2) 2005 (1) 2001 (1) 1999 (2) 1998 (1) 1997 (4)