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2012
Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.
Nicolas P, Mäder U, Dervyn E, Rochat T, Leduc A, Pigeonneau N, Bidnenko E, Marchadier E, Hoebeke M, Aymerich S, Becher D, Bisicchia P, Botella E, Delumeau O, Doherty G, Denham EL, Fogg MJ, Fromion V, Goelzer A, Hansen A, Härtig E, Harwood CR, Homuth G, Jarmer H, Jules M, Klipp E, Le Chat L, Lecointe F, Lewis P, Liebermeister W, March A, Mars RA, Nannapaneni P, Noone D, Pohl S, Rinn B, Rügheimer F, Sappa PK, Samson F, Schaffer M, Schwikowski B, Steil L, Stülke J, Wiegert T, Devine KM, Wilkinson AJ, van Dijl JM, Hecker M, Völker U, Bessières P, Noirot P
Science. 2012 Mar 2;335(6072):1103-6., 2012 |
PubMed
Relevant URL
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Global Network Reorganization During Dynamic Adaptations of Bacillus subtilis Metabolism
Buescher JM, Liebermeister W, Jules M, Uhr M, Muntel J, Botella E, Hessling B, Kleijn RJ, Chat LL, Lecointe F, Mäder U, Nicolas P, Piersma S, Rügheimer F, Becher D, Bessieres P, Bidnenko E, Denham EL, Dervyn E, Devine KM, Doherty G, Drulhe S, Felicori L, Fogg MJ, Goelzer A, Hansen A, Harwood CR, Hecker M, Hubner S, Hultschig C, Jarmer H, Klipp E, Leduc A, Lewis P, Molina F, Noirot P, Peres S, Pigeonneau N, Pohl S, Rasmussen S, Rinn D, Schaffer M, Schnidder J, Schwikowski B, Van Dijl JM, Veiga P, Walsh S, Wilkinson AJ, Stelling J, Aymerich S, Sauer U
Science, 2 March, 2012 |
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2011
MicroRNA-130a-mediated down-regulation of Smad4 contributes to reduced sensitivity to TGF-β1 stimulation in granulocytic precursors
Häger M, Pedersen CC, Larsen MT, Andersen MK, Hother C, Grønbæk K, Jarmer H, Borregaard N, Cowland JB
Blood, 118, 6649-59, 2011, 2011 |
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Evolution and diversification of Pseudomonas aeruginosa in the paranasal sinuses of cystic fibrosis children have implications for chronic lung infection
Hansen SK, Rau MH, Johansen HK, Ciofu O, Jelsbak L, Yang L, Folkesson A, Jarmer HØ, Aanæs K, von Buchwald C, Høiby N, Molin S
ISME J., 6, 31-45, 2011, 2011 |
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2010
Lactobacillus acidophilus induces virus immune defence genes in murine dendritic cells by a Toll-like receptor-2-dependent mechanism
Weiss G, Rasmussen S, Zeuthen LH, Nielsen BN, Jarmer H, Jespersen L, Frøkiær H
Immunology, 2010 |
PubMed
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Bifidobacterium bifidum Actively Changes the Gene Expression Profile Induced by Lactobacillus acidophilus in Murine Dendritic Cells
Weiss G, Rasmussen S, Nielsen Fink L, Jarmer H, Nøhr Nielsen B, Frøkiær H
PLoS One, 2010 |
PubMed
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2009
Transcriptomic variation in a coral reveals pathways of clonal organisation
Line K Bay, Bjørn Nielsen H, Hanne Jarmer, Francois Seneca, Madeleine J H van Oppe
Marine Genomics, 2009 |
Read abstract
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Transcriptional landscape estimation from tiling array data using a model of signal shift and drift.
Nicolas P, Leduc A, Robin S, Rasmussen S, Jarmer H, Bessières P
Bioinformatics 25: 2341-7, 2009 |
PubMed
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The transcriptionally active regions in the genome of Bacillus subtilis
Rasmussen S, Nielsen HB, Jarmer H
Mol Micro 73: 1043-57, 2009 |
PubMed
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Microarray analysis reveals transcriptional plasticity in the reef building coral Acropora millepora
Bay LK, Ulstrup KE, Nielsen HB, Jarmer H, Goffard N, Willis BL, Miller DJ, van Oppen MJH
Molecular Ecology; doi: 10.1111/j.1365-294X.2009.04257.x, 2009 |
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2008
Staphylokokkens ømme punkt.
Jarmer HO
Dynamo, November 2008, 2008 |
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Detection of anoxia-reponsive genes in cultured cells of the rainbow trout Oncorhynchus mykiss (Walbaum), using an optimized, genome-wide oligoarray
Olohan LA, Li W, Wulff T, Jarmer HO, Gracey AY, Cossins AR
Journal of Fish Biology. 2008. 72, 2170-2186, 2008 |
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GLI1 is involved in cell cycle regulation and proliferation of NT2 embryonal carcinoma stem cells
Vestergaard J, Lind-Thomsen A, Pedersen MW, Jarmer HO, Bak M, Hasholt L, Tommerup N, Tümer Z, Larsen LA
DNA Cell Biol. 2008 May;27(5):251-6., 2008 |
PubMed
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2007
Kamp med og mod bakterier
Jarmer H
DTU-avisen, 27 April, nr. 5, 2007 |
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The essential YycFG two-component system controls cell wall metabolism in Bacillus subtilis
Bisicchia P,Noone D,Lioliou E,Howell A,Quigley S,Jensen T,Jarmer H,Devine KM
Mol Microbiol. Jul;65(1):180-200, 2007 |
PubMed
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Genome-wide analysis of the Arabidopsis leaf transcriptome reveals interaction of phosphate and sugar metabolism
Muller R, Morant M, Jarmer H, Nilsson L, Nielsen TH
Plant Physiol., 143 (1), 156-71, 2007 |
PubMed
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2006
Metabolic network driven analysis of genome-wide transcription data from Aspergillus nidulans
David H, Hofmann G, Oliveira AP, Jarmer H, Nielsen J
Genome Biol., 7 (11): R108, 2006 |
PubMed
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2005
Alcohol-induced surface attachment of Listeria monocytogenes: Which mechanisms lie behind?
Knudsen B, Jarmer H, Knochel S, Gravesen A
Biotechnology, 118, 158-158, 2005 |
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2004
Genome update: correlation of bacterial genomic properties
Hallin PF, Coenye T, Binnewies TT, Jarmer H, Staerfeldt HH, Ussery DW
Microbiology, 150, 3899-903, 2004 |
PubMed
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Genome Update: DNA repeats in bacterial genomes
Ussery DW, Binnewies TT, Gouveia-Oliveira R, Jarmer H, Hallin PF
Microbiology 150, 3519-21, 2004 |
PubMed
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2002
Roles of PucR, GlnR, and TnrA in regulating expression of the Bacillus subtilis ure P3 promoter
Brandenburg JL, Wray LV Jr, Beier L, Jarmer H, Saxild HH, Fisher SH
J Bacteriol, 184, 6060-4, 2002 |
PubMed
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A new non-linear normalization method for reducing variability in DNA microarray experiments
Workman C, Jensen LJ, Jarmer H, Berka R, Gautier L, Nielsen HB, Saxild HH, Nielsen C, Brunak S, Knudsen S
Genome Biol., 3, research0048.1-0048.16, 2002 |
PubMed
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Transcription Analysis of the Bacillus subtilis PucR Regulon and Identification of a cis-Acting Sequence Required PucR-Regulated Expression of Genes Involved in Purine Catabolism
Beier L, Nygaard P, Jarmer H, Saxild HH
J. Bacteriol.,184, 3232-3241, 2002 |
PubMed
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Transcriptome analysis documents induced competence of Bacillus subtilis during nitrogen limiting conditions
Jarmer H, Berka R, Knudsen S, Saxild HH
FEMS Microbiology letters, 206, 197-200, 2002 |
PubMed
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2001
Sigma A recognition sites in the Bacillus subtilis genome
Jarmer H, Larsen TS, Krogh A, Saxild HH, Brunak S, Knudsen S
Microbiology, 147, 2417-24, 2001 |
PubMed
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Definition of the Bacillus subtilis PurR operator sequence using genetic and bioinformatic tools and expansion of the PurR regulon with glyA, guaC, pbuG, xpt-pbuX, yqhZ-folD and pbuO
Saxild HH, Bruntedt K, Nielsen KI, Jarmer H, Nygaard P
J. Bacteriol., 183, 6175-6183, 2001 |
PubMed
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This file was last modified Friday 31st 2013f May 2013 08:37:15 GMT |
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