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2012 (2) 2011 (2) 2010 (2) 2009 (4) 2008 (3) 2007 (3) 2006 and before (10)

2012

    Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.
    Nicolas P, Mäder U, Dervyn E, Rochat T, Leduc A, Pigeonneau N, Bidnenko E, Marchadier E, Hoebeke M, Aymerich S, Becher D, Bisicchia P, Botella E, Delumeau O, Doherty G, Denham EL, Fogg MJ, Fromion V, Goelzer A, Hansen A, Härtig E, Harwood CR, Homuth G, Jarmer H, Jules M, Klipp E, Le Chat L, Lecointe F, Lewis P, Liebermeister W, March A, Mars RA, Nannapaneni P, Noone D, Pohl S, Rinn B, Rügheimer F, Sappa PK, Samson F, Schaffer M, Schwikowski B, Steil L, Stülke J, Wiegert T, Devine KM, Wilkinson AJ, van Dijl JM, Hecker M, Völker U, Bessières P, Noirot P
    Science 335(6072):1103-6 doi:10.1126/science.1206848, 2012
    PubMed
    Relevant URL
    Global Network Reorganization During Dynamic Adaptations of Bacillus subtilis Metabolism
    Buescher JM, Liebermeister W, Jules M, Uhr M, Muntel J, Botella E, Hessling B, Kleijn RJ, Chat LL, Lecointe F, Mäder U, Nicolas P, Piersma S, Rügheimer F, Becher D, Bessieres P, Bidnenko E, Denham EL, Dervyn E, Devine KM, Doherty G, Drulhe S, Felicori L, Fogg MJ, Goelzer A, Hansen A, Harwood CR, Hecker M, Hubner S, Hultschig C, Jarmer H, Klipp E, Leduc A, Lewis P, Molina F, Noirot P, Peres S, Pigeonneau N, Pohl S, Rasmussen S, Rinn D, Schaffer M, Schnidder J, Schwikowski B, Van Dijl JM, Veiga P, Walsh S, Wilkinson AJ, Stelling J, Aymerich S, Sauer U
    Science, 2 March, 2012

2011

    MicroRNA-130a-mediated down-regulation of Smad4 contributes to reduced sensitivity to TGF-β1 stimulation in granulocytic precursors
    Häger M, Pedersen CC, Larsen MT, Andersen MK, Hother C, Grønbæk K, Jarmer H, Borregaard N, Cowland JB
    Blood, 118, 6649-59, 2011, 2011
    Evolution and diversification of Pseudomonas aeruginosa in the paranasal sinuses of cystic fibrosis children have implications for chronic lung infection
    Hansen SK, Rau MH, Johansen HK, Ciofu O, Jelsbak L, Yang L, Folkesson A, Jarmer HØ, Aanæs K, von Buchwald C, Høiby N, Molin S
    ISME J., 6, 31-45, 2011, 2011

2010

    Lactobacillus acidophilus induces virus immune defence genes in murine dendritic cells by a Toll-like receptor-2-dependent mechanism
    Weiss G, Rasmussen S, Zeuthen LH, Nielsen BN, Jarmer H, Jespersen L, Frøkiær H
    Immunology 131(2):268-81 doi:10.1111/j.1365-2567.2010.03301.x, 2010
    PubMed
    Bifidobacterium bifidum Actively Changes the Gene Expression Profile Induced by Lactobacillus acidophilus in Murine Dendritic Cells
    Weiss G, Rasmussen S, Nielsen Fink L, Jarmer H, Nøhr Nielsen B, Frøkiær H
    PLoS ONE 5(6):e11065 doi:10.1371/journal.pone.0011065, 2010
    PubMed

2009

    Transcriptomic variation in a coral reveals pathways of clonal organisation
    Line K Bay, Bjørn Nielsen H, Hanne Jarmer, Francois Seneca, Madeleine J H van Oppe
    Marine Genomics, 2009
    Read abstract
    Transcriptional landscape estimation from tiling array data using a model of signal shift and drift.
    Nicolas P, Leduc A, Robin S, Rasmussen S, Jarmer H, Bessières P
    Bioinformatics 25(18):2341-7 doi:10.1093/bioinformatics/btp395, 2009
    PubMed
    The transcriptionally active regions in the genome of Bacillus subtilis
    Rasmussen S, Nielsen HB, Jarmer H
    Mol. Microbiol. 73(6):1043-57 doi:10.1111/j.1365-2958.2009.06830.x, 2009
    PubMed
    Microarray analysis reveals transcriptional plasticity in the reef building coral Acropora millepora
    Bay LK, Ulstrup KE, Nielsen HB, Jarmer H, Goffard N, Willis BL, Miller DJ, van Oppen MJH
    Molecular Ecology; doi: 10.1111/j.1365-294X.2009.04257.x, 2009

2008

    Staphylokokkens ømme punkt.
    Jarmer HO
    Dynamo, November 2008, 2008
    Detection of anoxia-reponsive genes in cultured cells of the rainbow trout Oncorhynchus mykiss (Walbaum), using an optimized, genome-wide oligoarray
    Olohan LA, Li W, Wulff T, Jarmer HO, Gracey AY, Cossins AR
    Journal of Fish Biology. 2008. 72, 2170-2186, 2008
    GLI1 is involved in cell cycle regulation and proliferation of NT2 embryonal carcinoma stem cells
    Vestergaard J, Lind-Thomsen A, Pedersen MW, Jarmer HO, Bak M, Hasholt L, Tommerup N, Tümer Z, Larsen LA
    DNA Cell Biol. 27(5):251-6 doi:10.1089/dna.2007.0625, 2008
    PubMed

2007

    Kamp med og mod bakterier
    Jarmer H
    DTU-avisen, 27 April, nr. 5, 2007
    The essential YycFG two-component system controls cell wall metabolism in Bacillus subtilis
    Bisicchia P,Noone D,Lioliou E,Howell A,Quigley S,Jensen T,Jarmer H,Devine KM
    Mol. Microbiol. 65(1):180-200, 2007
    PubMed
    Genome-wide analysis of the Arabidopsis leaf transcriptome reveals interaction of phosphate and sugar metabolism
    Muller R, Morant M, Jarmer H, Nilsson L, Nielsen TH
    Plant Physiol. 143(1):156-71, 2007
    PubMed

2006

    Metabolic network driven analysis of genome-wide transcription data from Aspergillus nidulans
    David H, Hofmann G, Oliveira AP, Jarmer H, Nielsen J
    Genome Biol. 7(11):R108, 2006
    PubMed

2005

    Alcohol-induced surface attachment of Listeria monocytogenes: Which mechanisms lie behind?
    Knudsen B, Jarmer H, Knochel S, Gravesen A
    Biotechnology, 118, 158-158, 2005

2004

    Genome update: correlation of bacterial genomic properties
    Hallin PF, Coenye T, Binnewies TT, Jarmer H, Staerfeldt HH, Ussery DW
    Microbiology (Reading, Engl.) 150:3899-903, 2004
    PubMed
    Genome Update: DNA repeats in bacterial genomes
    Ussery DW, Binnewies TT, Gouveia-Oliveira R, Jarmer H, Hallin PF
    Microbiology (Reading, Engl.) 150:3519-21, 2004
    PubMed

2002

    Roles of PucR, GlnR, and TnrA in regulating expression of the Bacillus subtilis ure P3 promoter
    Brandenburg JL, Wray LV Jr, Beier L, Jarmer H, Saxild HH, Fisher SH
    J. Bacteriol. 184(21):6060-4, 2002
    PubMed
    A new non-linear normalization method for reducing variability in DNA microarray experiments
    Workman C, Jensen LJ, Jarmer H, Berka R, Gautier L, Nielsen HB, Saxild HH, Nielsen C, Brunak S, Knudsen S
    Genome Biol. 3(9):research0048, 2002
    PubMed
    Transcription Analysis of the Bacillus subtilis PucR Regulon and Identification of a cis-Acting Sequence Required PucR-Regulated Expression of Genes Involved in Purine Catabolism
    Beier L, Nygaard P, Jarmer H, Saxild HH
    J. Bacteriol. 184(12):3232-41, 2002
    PubMed
    Transcriptome analysis documents induced competence of Bacillus subtilis during nitrogen limiting conditions
    Jarmer H, Berka R, Knudsen S, Saxild HH
    FEMS Microbiol. Lett. 206(2):197-200, 2002
    PubMed

2001

    Sigma A recognition sites in the Bacillus subtilis genome
    Jarmer H, Larsen TS, Krogh A, Saxild HH, Brunak S, Knudsen S
    Microbiology (Reading, Engl.) 147:2417-24, 2001
    PubMed
    Definition of the Bacillus subtilis PurR operator sequence using genetic and bioinformatic tools and expansion of the PurR regulon with glyA, guaC, pbuG, xpt-pbuX, yqhZ-folD and pbuO
    Saxild HH, Bruntedt K, Nielsen KI, Jarmer H, Nygaard P
    J. Bacteriol. 183(21):6175-83, 2001
    PubMed

2012 (2) 2011 (2) 2010 (2) 2009 (4) 2008 (3) 2007 (3) 2006 and before (10)