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2010 (2) 2009 (2) 2007 (2) 2006 (2) 2005 (2) 2004 (1) 2003 and before (6)

2010

    Proteome analysis of pod and seed development in the model legume Lotus japonicus
    Nautrup-Pedersen G, Dam S, Laursen BS, Siegumfeldt AL, Nielsen K, Goffard N, Stærfeldt HH, Friis C, Sato S, Tabata S, Lorentzen A, Roepstorff P, Stougaard J
    Rev Esp Enferm Dig 78(4):205-9, 2010
    PubMed
    The Genome Atlas Resource
    Qureshi M, Rotenberg E, Staerfeldt HH, Hansson L, Ussery DW
    CSBio 2010 Proceedings, 115: 149-158, 2010

2009

    GeneWiz browser: An Interactive Tool for Visualizing Sequenced Chromosomes
    Hallin PF, Stærfeldt HH, Rotenberg E, Binnewies TT, Benham CJ, , Ussery DW
    Standards in Genomic Sciences, 1:204-215, 2009
    Relevant URL
    The proteome of seed development in the model legume Lotus japonicus.
    Dam S, Laursen BS, Ornfelt JH, Jochimsen B, Stærfeldt HH, Friis C, Nielsen K, Goffard N, Besenbacher S, Krusell L, Sato S, Tabata S, Thogersen IB, Enghild JJ, Stougaard J
    Plant Physiology. 149(3):1325-40 doi:10.1104/pp.108.133405, 2009
    PubMed

2007

    Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags
    Gorodkin J, Cirera S, Hedegaard J, Gilchrist MJ, Panitz F, Jørgensen C, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Rosenkilde C, Wang J, Li H, Li R, Liu B, Hu S, Dong W, Li W, Yu J, Wang J, Staerfeldt HH, Wernersson R, Madsen LB, Thomsen B, Hornshøj H, Bujie Z, Wang X, Wang X, Bolund L, Brunak S, Yang H, Bendixen C, Fredholm M
    Genome Biol. 8(4):R45, 2007
    PubMed
    Web
    RNAmmer: consistent and rapid annotation of ribosomal RNA genes
    Lagesen K, Hallin P, Rødland EA, Stærfeldt HH, Rognes T, Ussery DW
    Nucleic Acids Res. 35(9):3100-8, 2007
    PubMed

2006

    FeatureMap3D - a tool to map protein features and sequence conservation onto homologous structures in the PDB
    Wernersson R, Rapacki K, Staerfeldt HH, Sackett PW, Mølgaard A
    Nucleic Acids Res. 34:W84-8, 2006
    PubMed
    Web
    Origin of Replication in Circular Prokaryotic Chromosomes
    Worning P, Jensen LJ, Hallin PF, Stærfeldt HH, Ussery DW
    Environ. Microbiol. 8(2):353-61, 2006
    PubMed

2005

    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L
    BMC Genomics 6:70, 2005
    PubMed
    Genome Update: proteome comparisons
    Binnewies TT, Hallin PF, Staerfeldt HH, Ussery DW
    Microbiology (Reading, Engl.) 151:1-4, 2005
    PubMed

2004

    Genome update: correlation of bacterial genomic properties
    Hallin PF, Coenye T, Binnewies TT, Jarmer H, Staerfeldt HH, Ussery DW
    Microbiology (Reading, Engl.) 150:3899-903, 2004
    PubMed

2003

    Prediction of human protein function according to Gene Ontology categories
    Jensen LJ, Gupta R, Stærfeldt HH, Brunak S
    Bioinformatics 19(5):635-42, 2003
    PubMed

2002

    The Atlas Visualisation of Genome-wide Information
    Skovgaard M, Jensen LJ, Friis C, Stærfeldt H-H, Worning P, Brunak S, Ussery D
    Methods in Microbiology, 33, 49-63, 2002
    Bias of purine stretches in sequenced chromosomes
    Ussery D, Soumpasis DM, Brunak S, Stærfeldt HH, Worning P, Krogh A
    Comput. Chem. 26(5):531-41, 2002
    PubMed
    Prediction of human protein function from post-translational modifications and localization features
    Jensen LJ, Gupta R, Blom N, Devos D, Tamames J, Kesmir C, Nielsen H, Stærfeldt HH, Rapacki K, Workman C, Andersen CAF, Knudsen S, Krogh A, Valencia A, Brunak S
    J. Mol. Biol. 319(5):1257-65, 2002
    PubMed

2000

    A DNA structural atlas for Escherichia coli
    Pedersen AG, Jensen LJ, Stærfeldt H, Brunak S, Ussery DW
    J. Mol. Biol. 299(4):907-30, 2000
    PubMed
    Publication download

1999

    MatrixPlot: visualizing sequence constraints
    Gorodkin J, Stærfeldt HH, Lund O, Brunak S
    Bioinformatics 15(9):769-70, 1999
    PubMed

2010 (2) 2009 (2) 2007 (2) 2006 (2) 2005 (2) 2004 (1) 2003 and before (6)