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2014 (1) 2008 (1) 2007 (2) 2006 (1) 2005 (1) 2004 (2) 2003 and before (13) Books (1)

2014

    MR1-restricted MAIT cells display ligand discrimination and pathogen selectivity through distinct T cell receptor usage
    Gold MC, McLaren JE, Reistetter JA, Smyk-Pearson S, Ladell K, Swarbrick GM, Yu YY, Hansen TH, Lund O, Nielsen M, Gerritsen B, Kesmir C, Miles JJ, Lewinsohn DA, Price DA, Lewinsohn DM
    Journal of Experimental Medicine. 2014 Jul 28;211(8):1601-10., 2014
    PubMed

2008

    Amino acid similarity accounts for T cell cross-reactivity and for \\\'holes\\\' in the T cell repertoire
    Frankild S, de Boer RJ, Lund O, Nielsen M, Kesmir C
    PLoS ONE 3(3):e1831 doi:10.1371/journal.pone.0001831, 2008
    PubMed

2007

    Modeling the adaptive immune system: predictions and simulations
    Lundegaard C, Lund O, Kesmir C, Brunak S, Nielsen M
    Bioinformatics 23(24):3265-75, 2007
    PubMed
    HLA Alleles Associated with Slow Progression to AIDS Truly Prefer to Present HIV-1 p24
    Borghans JA, Molgaard A, de Boer RJ, Kesmir C
    PLoS ONE 2(9):e920, 2007
    PubMed

2006

    Modelling the human immune system by combining bioinformatics and systems biology approaches
    Rapin N, Kesmir C, Frankild S et al
    Journal of Biological Physics, 32 (3-4), 335-353, 2006

2005

    The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage
    Nielsen M, Lundegaard C, Lund O, Kesmir C
    Immunogenetics 57:33-41, 2005
    PubMed

2004

    Definition of supertypes for HLA molecules using clustering of specificity matrices
    Lund O, Nielsen M, Kesmir C, Pedersen AG, Lundegaard C, Worning P, Sylvester-Hvid C, Lamberth K, Roder G, Justesen S, Buus S, Brunak S
    Immunogenetics 55(12):797-810, 2004
    PubMed
    Heterozygote advantage fails to explain the high degree of polymorphism of the MHC
    De Boer RJ, Borghans JA, Van Boven M, Kesmir C, Weissing FJ
    Immunogenetics 55(11):725-31, 2004
    PubMed

2003

    Bioinformatic analysis of functional differences between the immunoproteasome and the constitutive proteasome
    Kesmir C, van Noort V, de Boer RJ, Hogeweg P
    Immunogenetics 55(7):437-49, 2003
    PubMed
    Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach
    Buus S, Lauemoller SL, Worning P, Kesmir C, Frimurer T, Corbet S, Fomsgaard A, Hilden J, Holm A, Brunak S
    Tissue Antigens 62(5):378-84, 2003
    PubMed
    Predicting proteasomal cleavage sites: a comparison of available methods
    Saxova P, Buus S, Brunak S, Kesmir C
    International Immunology. 15(7):781-7, 2003
    PubMed

2002

    Web-based Tools for Vaccine Design
    Lund O, Nielsen M, Kesmir C, Christensen JK, Lundegaard C, Worning P, Brunak S
    HIV Molecular Immunology, pp. 45-51, 2002
    Clustering Patterns of Cytotoxic T-Lymphocyte Epitopes in Human Immunodeficiency Virus Type 1 (HIV-1) Proteins Reveal Imprints of Immune Evasion on HIV-1 Global Variation
    Yusim K, Kesmir C, Gaschen B, Addo MM, Altfeld M, Brunak S, Chigaev A, Detours V, Korber BT
    J. Virol. 76(17):8757-68, 2002
    PubMed
    Prediction of human protein function from post-translational modifications and localization features
    Jensen LJ, Gupta R, Blom N, Devos D, Tamames J, Kesmir C, Nielsen H, Stærfeldt HH, Rapacki K, Workman C, Andersen CAF, Knudsen S, Krogh A, Valencia A, Brunak S
    J. Mol. Biol. 319(5):1257-65, 2002
    PubMed
    Prediction of proteasome cleavage motifs by neural networks
    Kesmir C, Nussbaum AK, Schild H, Detours V, Brunak S
    Protein Eng. 15(4):287-96, 2002
    PubMed
    Variety identification of wheat using mass spectrometry with neural networks and the influence of mass spectra processing prior to neural network analysis
    Aagaard Sørensen H, Sperotto MM, Petersen M, Kesmir C, Radzikowski L, Jacobsen S, Søndergaard I
    Rapid Commun. Mass Spectrom. 16(12):1232-7, 2002
    PubMed

2001

    Evolutionary and immunological implications of contemporary HIV-1 variation
    Korber B, Gaschen B, Yusim K, Thakallapally R, Kesmir C, Detours V
    Br. Med. Bull. 58:19-42, 2001
    PubMed

2000

    Identifying cytotoxic T cell epitopes from genomic and proteomic information: "The human MHC project"
    Lauemøller SL, Kesmir C, Corbet SL, Fomsgaard A, Holm A, Claesson MH, Brunak S, Buus S
    Rev Immunogenet 2(4):477-91, 2000
    PubMed

1999

    A mathematical model on germinal center kinetics and termination
    Kesmir C, De Boer RJ
    J. Immunol. 163(5):2463-9, 1999
    PubMed
    Identification of wheat varieties using matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry and an artificial neural network
    Bloch HA, Kesmir C, Petersen M, Jacobsen S, Sondergaard II
    Rapid Commun. Mass Spectrom. 13(14):1535-9, 1999
    PubMed

1994

    Correlation between protein secondary structure and the mRNA nucleotide sequence
    Brunak S, Engelbrecht J, Kesmir C
    in ``Protein Structure by Distance Analysis'', H. Bohr and S. Brunak (eds.), 327-334, IOS Press, Amsterdam, 1994


Books

    Immunological Bioinformatics
    Lund O, Nielsen M, Lundegaard C, Kesmir C, Brunak S
    MIT Press, 312 pages, 2005
    Details

2014 (1) 2008 (1) 2007 (2) 2006 (1) 2005 (1) 2004 (2) 2003 and before (13) Books (1)