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2008
Amino acid similarity accounts for T cell cross-reactivity and for \\\'holes\\\' in the T cell repertoire
Frankild S, de Boer RJ, Lund O, Nielsen M, Kesmir C
PLoS ONE. 2008 Mar 19;3(3):e1831, 2008 |
PubMed
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2007
Modeling the adaptive immune system: predictions and simulations
Lundegaard C, Lund O, Kesmir C, Brunak S, Nielsen M
Bioinformatics, 23:3265-75, 2007 |
PubMed
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HLA Alleles Associated with Slow Progression to AIDS Truly Prefer to Present HIV-1 p24
Borghans JA, Molgaard A, de Boer RJ, Kesmir C
PLoS ONE. Sep 19;2(9):e920, 2007 |
PubMed
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2006
Modelling the human immune system by combining bioinformatics and systems biology approaches
Rapin N, Kesmir C, Frankild S et al
Journal of Biological Physics, 32 (3-4), 335-353, 2006 |
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2005
The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage
Nielsen M, Lundegaard C, Lund O, Kesmir C
Immunogenetics, 57, 33-41, 2005 |
PubMed
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2004
Definition of supertypes for HLA molecules using clustering of specificity matrices
Lund O, Nielsen M, Kesmir C, Pedersen AG, Lundegaard C, Worning P, Sylvester-Hvid C, Lamberth K, Roder G, Justesen S, Buus S, Brunak S
Immunogenetics, 55, 797-810, 2004 |
PubMed
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Heterozygote advantage fails to explain the high degree of polymorphism of the MHC
De Boer RJ, Borghans JA, Van Boven M, Kesmir C, Weissing FJ
Immunogenetics, 55, 725-31, 2004 |
PubMed
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2003
Bioinformatic analysis of functional differences between the immunoproteasome and the constitutive proteasome
Kesmir C, van Noort V, de Boer RJ, Hogeweg P
Immunogenetics, 55, 437-49, 2003 |
PubMed
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Sensitive quantitative predictions of peptide-MHC binding by a 'Query by Committee' artificial neural network approach
Buus S, Lauemoller SL, Worning P, Kesmir C, Frimurer T, Corbet S, Fomsgaard A, Hilden J, Holm A, Brunak S
Tissue Antigens, 62, 378-384, 2003 |
PubMed
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Predicting proteasomal cleavage sites: a comparison of available methods
Saxova P, Buus S, Brunak S, Kesmir C
International Immunology, 15, 781-787, 2003 |
PubMed
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2002
Web-based Tools for Vaccine Design
Lund O, Nielsen M, Kesmir C, Christensen JK, Lundegaard C, Worning P, Brunak S
HIV Molecular Immunology, pp. 45-51, 2002 |
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Clustering Patterns of Cytotoxic T-Lymphocyte Epitopes in Human Immunodeficiency Virus Type 1 (HIV-1) Proteins Reveal Imprints of Immune Evasion on HIV-1 Global Variation
Yusim K, Kesmir C, Gaschen B, Addo MM, Altfeld M, Brunak S, Chigaev A, Detours V, Korber BT
J. Virol., 76, 8757-8768, 2002 |
PubMed
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Prediction of human protein function from post-translational modifications and localization features
Jensen LJ, Gupta R, Blom N, Devos D, Tamames J, Kesmir C, Nielsen H, Stærfeldt HH, Rapacki K, Workman C, Andersen CAF, Knudsen S, Krogh A, Valencia A, Brunak S
J. Mol. Biol., 319, 1257-1265, 2002 |
PubMed
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Prediction of proteasome cleavage motifs by neural networks
Kesmir C, Nussbaum AK, Schild H, Detours V, Brunak S
Protein Eng., 15, 287-296, 2002 |
PubMed
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Variety identification of wheat using mass spectrometry with neural networks and the influence of mass spectra processing prior to neural network analysis
Aagaard Sørensen H, Sperotto MM, Petersen M, Kesmir C, Radzikowski L, Jacobsen S, Søndergaard I
Rapid Comm. Mass Spectrom., 16, 1232-1237, 2002 |
PubMed
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2001
Evolutionary and immunological implications of contemporary HIV-1 variation
Korber B, Gaschen B, Yusim K, Thakallapally R, Kesmir C, Detours V
Br. Med Bull., 58, 19-42, (review), 2001 |
PubMed
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2000
Identifying cytotoxic T cell epitopes from genomic and proteomic information: "The human MHC project"
Lauemøller SL, Kesmir C, Corbet SL, Fomsgaard A, Holm A, Claesson MH, Brunak S, Buus S
Rev. Immunogenetics, 2, 477-91, 2000 |
PubMed
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1999
A mathematical model on germinal center kinetics and termination
Kesmir C, De Boer RJ
J. Immunol., 163(5), 2463-2469, 1999 |
PubMed
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Identification of wheat varieties using matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry and an artificial neural network
Bloch HA, Kesmir C, Petersen M, Jacobsen S, Sondergaard II
Rapid Commun Mass Spectrom., 13, 1535-1539, 1999 |
PubMed
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1994
Correlation between protein secondary structure and the mRNA nucleotide sequence
Brunak S, Engelbrecht J, Kesmir C
in ``Protein Structure by Distance Analysis'', H. Bohr and S. Brunak (eds.), 327-334, IOS Press, Amsterdam, 1994 |
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Books
Immunological Bioinformatics
Lund O, Nielsen M, Lundegaard C, Kesmir C, Brunak S
MIT Press, 312 pages, 2005 |
Details
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This file was last modified Friday 31st 2013f May 2013 08:37:15 GMT |
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