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2013 (1) 2011 (1) 2003 (3) 2002 (2) 2001 (7) 2000 (1) 1999 and before (13) Books (1)

2013

    Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.
    Orlando L, Ginolhac A, Zhang G, Froese D, Albrechtsen A, Stiller M, Schubert M, Cappellini E, Petersen B, Moltke I, Johnson PL, Fumagalli M, Vilstrup JT, Raghavan M, Korneliussen T, Malaspinas AS, Vogt J, Szklarczyk D, Kelstrup CD, Vinther J, Dolocan A, Stenderup J, Velazquez AM, Cahill J, Rasmussen M, Wang X, Min J, Zazula GD, Seguin-Orlando A, Mortensen C, Magnussen K, Thompson JF, Weinstock J, Gregersen K, Røed KH, Eisenmann V, Rubin CJ, Miller DC, Antczak DF, Bertelsen MF, Brunak S, Al-Rasheid KA, Ryder O, Andersson L, Mundy J, Krogh A, Gilbert MT, Kjær K, Sicheritz-Ponten T, Jensen LJ, Olsen JV, Hofreiter M, Nielsen R, Shapiro B, Wang J, Willerslev E
    Nature. 2013, 2013
    PubMed
    Relevant URL

2011

    An Aboriginal Australian Genome Reveals Separate Human Dispersals into Asia
    Rasmussen M, Guo X, Wang Y, Lohmueller KE, Rasmussen S, Albrechtsen A, Skotte L, Lindgren S, Metspalu M, Jombart T, Kivisild T, Zhai W, Eriksson A, Manica A, Orlando L, De La Vega F, Tridico S, Metspalu E, Nielsen K, Ávila-Arcos MA, Moreno-Mayar JV, Muller C, Dortch J, Gilbert MTP, Lund O, Wesolowska A, Karmin M, Weinert LA, Wang B, Li J, Tai S, Xiao F, Hanihara T, van Driem G, Jha AR, Ricaut FX, de Knijf P, Migliano AB, Gallego-Romero I, Kristiansen K, Lambert DM, Brunak S, Forster P, Brinkmann B, Nehlich O, Bunce M, Richards M, Gupta R, Bustamante CD, Krogh A, Foley RA, Lahr MM, Balloux F, Sichertitz-Pontén T, Villems R, Nielsen R, Jun W, Willerslev E
    Science, 2011
    PubMed

2003

    EasyGene - – a prokaryotic gene finder that ranks ORFs by statistical significance
    Larsen TS, Krogh A
    BMC Bioinformatics, 3;4, 21, 2003
    PubMed
    Prediction of lipoprotein signal peptides in Gram-negative bacteria
    Juncker AS, Willenbrock H, Von Heijne G, Brunak S, Nielsen H, Krogh A
    Protein Science,12, 1652-62, 2003
    PubMed
    RpoD promoters in Campylobacter jejuni exhibit a strong periodic signal instead of a -35 box
    Petersen L, Larsen TS, Ussery DW, On SL, Krogh A
    J Mol Biol., 326, 1361-72, 2003
    PubMed

2002

    Bias of purine stretches in sequenced chromosomes
    Ussery D, Soumpasis DM, Brunak S, Stærfeldt HH, Worning P, Krogh A
    Computers and Chemistry, 26, 531-541, 2002
    PubMed
    Prediction of human protein function from post-translational modifications and localization features
    Jensen LJ, Gupta R, Blom N, Devos D, Tamames J, Kesmir C, Nielsen H, Stærfeldt HH, Rapacki K, Workman C, Andersen CAF, Knudsen S, Krogh A, Valencia A, Brunak S
    J. Mol. Biol., 319, 1257-1265, 2002
    PubMed

2001

    Predicting Transmembrane Protein Topology with a Hidden Markov Model: Application to Complete Genomes
    Krogh A, Larsson B, von Heijne G, Sonnhammer ELL
    J. Mol. Biol., 305, 567-580, 2001
    PubMed
    Genome Organisation and Chromatin Structure in Escherichia coli
    Ussery D, Larsen TS, Wilkes KT, Friis C, Worning P, Krogh A, Brunak S
    Biochimie, 83, 202-212 (cover illustration), 2001
    PubMed
    Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18
    Parkhill J, Dougan G, James KD, Thomson NR, Pickard D, Wain J, Churcher C, Mungall KL, Bentley SD, Holden MT, Sebaihia M, Baker S, Basham D, Brooks K, Chillingworth T, Connerton P, Cronin A, Davis P, Davies RM, Dowd L, White N, Farrar J, Feltwell T, Hamlin N, Haque A, Hien TT, Holroyd S, Jagels K, Krogh A, Larsen TS, Leather S, Moule S, O\\\'Gaora P, Parry C, Quail M, Rutherford K, Simmonds M, Skelton J, Stevens K, Whitehead S, Barrell BG
    Nature, 413, 848-852, 2001
    PubMed
    Sigma A recognition sites in the Bacillus subtilis genome
    Jarmer H, Larsen TS, Krogh A, Saxild HH, Brunak S, Knudsen S
    Microbiology, 147, 2417-24, 2001
    PubMed
    On the total number of genes and their length distribution in complete microbial genomes
    Skovgaard M, Jensen LJ, Brunak S, Ussery D, Krogh A
    Trends Genet., 17, 425-428, 2001
    PubMed
    Proceedings of ISMB
    Brunak S, Krogh A (eds.)
    Bioinformatics, 17, 2001
    ISMB2001 - Proceedings for the Ninth international Conference on Intelligent Systems for Molecular Biology
    Brunak S, Gallison F, Gribskov M, Krogh A, Pedersen AG, Rouze P, Stormo G, Tramontano A (eds.)
    Bioinformatics, 17, Suppl. 1, 2001
    TOC

2000

    Using database matches with HMMgene for automated gene detection in Drosophila
    Krogh A
    Genome Res., 10, 523-528, 2000
    PubMed

1999

    No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution
    Workman C, Krogh A
    Nucleic Acids Res., 27, 4816-4822, 1999
    PubMed
    Hidden neural networks
    Krogh A, Riis SK
    Neural Comput., 11, 541-563, 1999
    PubMed

1998

    Gene finding: putting the parts together
    Krogh A
    in M.J. Bishop (ed.), ``Guide to Human Genome Computing'', Academic Press, 261-274, 1998
    An Introduction to Hidden Markov Models for Biological Sequences
    Krogh A
    in S.L. Salzberg, D.B. Searls and S. Kasif (eds.), ``Computational Methods in Molecular Biology'', Elsevier, 45-63, 1998
    Prediction of signal peptides and signal anchors by a hidden Markov model
    Nielsen H, Krogh A
    Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology (ISMB98), 122-130, 1998
    PubMed
    A hidden Markov model for predicting transmembrane helices in protein sequences
    Sonnhammer ELL, von Heijne G, Krogh A
    Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology (ISMB98), 175-182, 1998
    PubMed

1997

    Hidden Markov models for human genes: periodic patterns in exon sequences
    Baldi P, Brunak S, Chauvin Y, Krogh A
    in Theoretical and Computational Methods in Genome Research, S. Suhai (ed.), Plenum Press, N.Y., 15-32, 1997
    PubMed
    Hidden neural networks: a framework for HMM/NN hybrids
    Riis SK, Krogh A
    Proceedings of ICASSP \'97, 4, IEEE, New York, 3233-3236, 1997
    PubMed
    Two Methods for Improving Performance of a HMM and their Application for Gene Finding
    Krogh A
    Proceedings of the Fifth International Conference on Intelligent Systems for Molecular Biology (ISMB97), 179-186, 1997
    PubMed
    Non-linear backpropagation: doing back-propagation without derivatives of the activation function
    Hertz JA, Krogh A, Lautrup B, Lehmann T
    IEEE Transactions on Neural Networks, 8, 1321-1327, 1997
    PubMed

1996

    Naturally occurring nucleosome positioning signals in human exons and introns
    Baldi P, Brunak S, Chauvin Y, Krogh A
    J. Mol. Biol., 263, 503-510, 1996
    PubMed

1995

    Periodic sequence patterns in human exons
    Baldi P, Brunak S, Chauvin Y, Engelbrecht J, Krogh A
    Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology (ISMB95), AAAI Press, 30-38, 1995
    PubMed

1994

    Hidden Markov Models for Human Genes
    Baldi P, Brunak S, Chauvin Y, Engelbrecht J, Krogh A
    in Advances in Neural Information Processing Systems, 6, 761-768, Morgan Kaufmann Pub, 1994


Books

    Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids
    Durbin R, Eddy S, Krogh A, Mitchison GJ
    Cambridge University Press, 350 pages, 1998

2013 (1) 2011 (1) 2003 (3) 2002 (2) 2001 (7) 2000 (1) 1999 and before (13) Books (1)