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2013
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.
Orlando L, Ginolhac A, Zhang G, Froese D, Albrechtsen A, Stiller M, Schubert M, Cappellini E, Petersen B, Moltke I, Johnson PL, Fumagalli M, Vilstrup JT, Raghavan M, Korneliussen T, Malaspinas AS, Vogt J, Szklarczyk D, Kelstrup CD, Vinther J, Dolocan A, Stenderup J, Velazquez AM, Cahill J, Rasmussen M, Wang X, Min J, Zazula GD, Seguin-Orlando A, Mortensen C, Magnussen K, Thompson JF, Weinstock J, Gregersen K, Røed KH, Eisenmann V, Rubin CJ, Miller DC, Antczak DF, Bertelsen MF, Brunak S, Al-Rasheid KA, Ryder O, Andersson L, Mundy J, Krogh A, Gilbert MT, Kjær K, Sicheritz-Ponten T, Jensen LJ, Olsen JV, Hofreiter M, Nielsen R, Shapiro B, Wang J, Willerslev E
Nature. 2013, 2013 |
PubMed
Relevant URL
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2011
An Aboriginal Australian Genome Reveals Separate Human Dispersals into Asia
Rasmussen M, Guo X, Wang Y, Lohmueller KE, Rasmussen S, Albrechtsen A, Skotte L, Lindgren S, Metspalu M, Jombart T, Kivisild T, Zhai W, Eriksson A, Manica A, Orlando L, De La Vega F, Tridico S, Metspalu E, Nielsen K, Ávila-Arcos MA, Moreno-Mayar JV, Muller C, Dortch J, Gilbert MTP, Lund O, Wesolowska A, Karmin M, Weinert LA, Wang B, Li J, Tai S, Xiao F, Hanihara T, van Driem G, Jha AR, Ricaut FX, de Knijf P, Migliano AB, Gallego-Romero I, Kristiansen K, Lambert DM, Brunak S, Forster P, Brinkmann B, Nehlich O, Bunce M, Richards M, Gupta R, Bustamante CD, Krogh A, Foley RA, Lahr MM, Balloux F, Sichertitz-Pontén T, Villems R, Nielsen R, Jun W, Willerslev E
Science, 2011 |
PubMed
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2003
EasyGene - – a prokaryotic gene finder that ranks ORFs by statistical significance
Larsen TS, Krogh A
BMC Bioinformatics, 3;4, 21, 2003 |
PubMed
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Prediction of lipoprotein signal peptides in Gram-negative bacteria
Juncker AS, Willenbrock H, Von Heijne G, Brunak S, Nielsen H, Krogh A
Protein Science,12, 1652-62, 2003 |
PubMed
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RpoD promoters in Campylobacter jejuni exhibit a strong periodic signal instead of a -35 box
Petersen L, Larsen TS, Ussery DW, On SL, Krogh A
J Mol Biol., 326, 1361-72, 2003 |
PubMed
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2002
Bias of purine stretches in sequenced chromosomes
Ussery D, Soumpasis DM, Brunak S, Stærfeldt HH, Worning P, Krogh A
Computers and Chemistry, 26, 531-541, 2002 |
PubMed
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Prediction of human protein function from post-translational modifications and localization features
Jensen LJ, Gupta R, Blom N, Devos D, Tamames J, Kesmir C, Nielsen H, Stærfeldt HH, Rapacki K, Workman C, Andersen CAF, Knudsen S, Krogh A, Valencia A, Brunak S
J. Mol. Biol., 319, 1257-1265, 2002 |
PubMed
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2001
Predicting Transmembrane Protein Topology with a Hidden Markov Model: Application to Complete Genomes
Krogh A, Larsson B, von Heijne G, Sonnhammer ELL
J. Mol. Biol., 305, 567-580, 2001 |
PubMed
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Genome Organisation and Chromatin Structure in Escherichia coli
Ussery D, Larsen TS, Wilkes KT, Friis C, Worning P, Krogh A, Brunak S
Biochimie, 83, 202-212 (cover illustration), 2001 |
PubMed
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Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18
Parkhill J, Dougan G, James KD, Thomson NR, Pickard D, Wain J, Churcher C, Mungall KL, Bentley SD, Holden MT, Sebaihia M, Baker S, Basham D, Brooks K, Chillingworth T, Connerton P, Cronin A, Davis P, Davies RM, Dowd L, White N, Farrar J, Feltwell T, Hamlin N, Haque A, Hien TT, Holroyd S, Jagels K, Krogh A, Larsen TS, Leather S, Moule S, O\\\'Gaora P, Parry C, Quail M, Rutherford K, Simmonds M, Skelton J, Stevens K, Whitehead S, Barrell BG
Nature, 413, 848-852, 2001 |
PubMed
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Sigma A recognition sites in the Bacillus subtilis genome
Jarmer H, Larsen TS, Krogh A, Saxild HH, Brunak S, Knudsen S
Microbiology, 147, 2417-24, 2001 |
PubMed
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On the total number of genes and their length distribution in complete microbial genomes
Skovgaard M, Jensen LJ, Brunak S, Ussery D, Krogh A
Trends Genet., 17, 425-428, 2001 |
PubMed
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Proceedings of ISMB
Brunak S, Krogh A (eds.)
Bioinformatics, 17, 2001 |
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ISMB2001 - Proceedings for the Ninth international Conference on Intelligent Systems for Molecular Biology
Brunak S, Gallison F, Gribskov M, Krogh A, Pedersen AG, Rouze P, Stormo G, Tramontano A (eds.)
Bioinformatics, 17, Suppl. 1, 2001 |
TOC
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2000
Using database matches with HMMgene for automated gene detection in Drosophila
Krogh A
Genome Res., 10, 523-528, 2000 |
PubMed
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1999
No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution
Workman C, Krogh A
Nucleic Acids Res., 27, 4816-4822, 1999 |
PubMed
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Hidden neural networks
Krogh A, Riis SK
Neural Comput., 11, 541-563, 1999 |
PubMed
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1998
Gene finding: putting the parts together
Krogh A
in M.J. Bishop (ed.), ``Guide to Human Genome Computing'', Academic Press, 261-274, 1998 |
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An Introduction to Hidden Markov Models for Biological Sequences
Krogh A
in S.L. Salzberg, D.B. Searls and S. Kasif (eds.), ``Computational Methods in Molecular Biology'', Elsevier, 45-63, 1998 |
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Prediction of signal peptides and signal anchors by a hidden Markov model
Nielsen H, Krogh A
Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology (ISMB98), 122-130, 1998 |
PubMed
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A hidden Markov model for predicting transmembrane helices in protein sequences
Sonnhammer ELL, von Heijne G, Krogh A
Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology (ISMB98), 175-182, 1998 |
PubMed
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1997
Hidden Markov models for human genes: periodic patterns in exon sequences
Baldi P, Brunak S, Chauvin Y, Krogh A
in Theoretical and Computational Methods in Genome Research, S. Suhai (ed.), Plenum Press, N.Y., 15-32, 1997 |
PubMed
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Hidden neural networks: a framework for HMM/NN hybrids
Riis SK, Krogh A
Proceedings of ICASSP \'97, 4, IEEE, New York, 3233-3236, 1997 |
PubMed
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Two Methods for Improving Performance of a HMM and their Application for Gene Finding
Krogh A
Proceedings of the Fifth International Conference on Intelligent Systems for Molecular Biology (ISMB97), 179-186, 1997 |
PubMed
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Non-linear backpropagation: doing back-propagation without derivatives of the activation function
Hertz JA, Krogh A, Lautrup B, Lehmann T
IEEE Transactions on Neural Networks, 8, 1321-1327, 1997 |
PubMed
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1996
Naturally occurring nucleosome positioning signals in human exons and introns
Baldi P, Brunak S, Chauvin Y, Krogh A
J. Mol. Biol., 263, 503-510, 1996 |
PubMed
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1995
Periodic sequence patterns in human exons
Baldi P, Brunak S, Chauvin Y, Engelbrecht J, Krogh A
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology (ISMB95), AAAI Press, 30-38, 1995 |
PubMed
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1994
Hidden Markov Models for Human Genes
Baldi P, Brunak S, Chauvin Y, Engelbrecht J, Krogh A
in Advances in Neural Information Processing Systems, 6, 761-768, Morgan Kaufmann Pub, 1994 |
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Books
Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids
Durbin R, Eddy S, Krogh A, Mitchison GJ
Cambridge University Press, 350 pages, 1998 |
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This file was last modified Friday 31st 2013f May 2013 08:37:15 GMT |
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