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2013 (3) 2010 (4) 2008 (2) 2007 (1) 2006 (3) 2005 (3) 2004 and before (17)

2013

    A nondegenerate code of deleterious variants in mendelian Loci contributes to complex disease risk.
    Blair DR, Lyttle CS, Mortensen JM, Bearden CF, Jensen AB, Khiabanian H, Melamed R, Rabadan R, Bernstam EV, Brunak S, Jensen LJ, Nicolae D, Shah NH, Grossman RL, Cox NJ, White KP, Rzhetsky A
    Cell. 2013, 2013
    PubMed
    Relevant URL
    TIMP-1 increases expression and phosphorylation of proteins associated with drug resistance in breast cancer cells.
    Hekmat O, Munk S, Fogh L, Yadav R, Francavilla C, Horn H, Wurtz SO, Schrohl AS, Damsgaard B, Romer MU, Belling K, Jensen NF, Gromova I, Bekker-Jensen DB, Moreira JM, Jensen LJ, Gupta R, Lademann U, Brunner N, Olsen JV, Stenvang J
    J Proteome Res. 2013, 2013
    PubMed
    Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.
    Orlando L, Ginolhac A, Zhang G, Froese D, Albrechtsen A, Stiller M, Schubert M, Cappellini E, Petersen B, Moltke I, Johnson PL, Fumagalli M, Vilstrup JT, Raghavan M, Korneliussen T, Malaspinas AS, Vogt J, Szklarczyk D, Kelstrup CD, Vinther J, Dolocan A, Stenderup J, Velazquez AM, Cahill J, Rasmussen M, Wang X, Min J, Zazula GD, Seguin-Orlando A, Mortensen C, Magnussen K, Thompson JF, Weinstock J, Gregersen K, Røed KH, Eisenmann V, Rubin CJ, Miller DC, Antczak DF, Bertelsen MF, Brunak S, Al-Rasheid KA, Ryder O, Andersson L, Mundy J, Krogh A, Gilbert MT, Kjær K, Sicheritz-Ponten T, Jensen LJ, Olsen JV, Hofreiter M, Nielsen R, Shapiro B, Wang J, Willerslev E
    Nature. 2013, 2013
    PubMed
    Relevant URL

2010

    Protein annotation in the era of personal genomics
    Blicher T, Gupta R, Wesolowska A, Jensen LJ, Brunak S
    Curr Opin Struct Biol, 2010 Apr 17, 2010
    PubMed
    Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis
    Olsen JV, Vermeulen M, Santamaria A, Kumar C, Miller ML, Jensen LJ, Gnad F, Cox J, Jensen TS, Nigg EA, Brunak S, Mann M
    Sci Signal 12;3(104):ra3, 2010
    PubMed
    Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results
    Gauthier NP, Jensen LJ, Wernersson R, Brunak S, Jensen TS
    Nucleic Acids Res. 38(Database issue):D699-702, 2010
    PubMed
    Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis
    Olsen JV, Vermeulen M, Santamaria A, Kumar C, Miller ML, Jensen LJ, Gnad F, Cox J, Jensen TS, Nigg EA, Brunak S, Mann M
    Sci Signal. 12;3(104):ra3, 2010
    PubMed

2008

    Circular reasoning rather than cyclic expression
    Jensen LJ, de Lichtenberg U, Jensen TS, Brunak S, Bork P
    Genome Biol. 2008;9(6):403. Epub 2008 Jun 23, 2008
    PubMed
    Linear motif atlas for phosphorylation-dependent signaling.
    Miller ML, Jensen LJ, Diella F, Jørgensen C, Tinti M, Li L, Hsiung M, Parker SA, Bordeaux J, Sicheritz-Ponten T, Olhovsky M, Pasculescu A, Alexander J, Knapp S, Blom N, Bork P, Li S, Cesareni G, Pawson T, Turk BE, Yaffe MB, Brunak S, Linding R
    Science Signaling, 2008 Sep 2;1(35):ra2, 2008
    PubMed

2007

    Evolution of cell cycle control: same molecular machines, different regulation
    de Lichtenberg U, Jensen TS, Brunak S, Bork P, Jensen LJ
    Cell Cycle,1;6(15):1819-25, 2007
    PubMed

2006

    Co-evolution of transcriptional and post-translational cell-cycle regulation
    Jensen LJ, Jensen TS, de Lichtenberg U, Brunak S, Bork P
    Nature, 443 (7111), 594-7, 2006
    PubMed
    The more the merrier: comparative analysis of microarray studies on cell cycle-regulated genes in fission yeast
    Marguerat S, Jensen TS, de Lichtenberg U, Wilhelm BT, Jensen LJ, Bahler J
    Yeast, 23, 261-77, 2006
    PubMed
    Origin of Replication in Circular Prokaryotic Chromosomes
    Worning P, Jensen LJ, Hallin PF, Stærfeldt HH, Ussery DW
    Environ Microbiol, 8, 353-61, 2006
    PubMed

2005

    Crystal ball. Systems biology: in the broadest sense of the word
    Ussery DW, de Lichtenberg U, Jensen LJ
    Environmental Microbiology, 7, 482-83, 2005
    PubMed
    Comparison of computational methods for the identification of cell cycle-regulated genes
    de Lichtenberg U, Jensen LJ, Fausboll A, Jensen TS, Bork P, Brunak S
    Bioinformatics, 1;21, 1164-71, 2005
    PubMed
    Dynamic Complex Formation During the Yeast Cell Cycle
    de Lichtenberg U, Jensen LJ, Brunak S, Bork P
    Science, 307, 724-727, 2005
    PubMed

2004

    Feature-based prediction of non-classical and leaderless protein secretion
    Bendtsen JD, Jensen LJ, Blom N, Von Heijne G, Brunak S
    Protein Engineering Design and Selection, 17, 349-56, 2004
    PubMed

2003

    Functionality of System Components: Conservation of Protein Function in Protein Feature Space
    Jensen LJ, Ussery DW, Brunak S
    Genome Res., 13, 2444-9, 2003
    PubMed
    Protein feature based identification of cell cycle regulated proteins in yeast
    de Lichtenberg U, Jensen TS, Jensen LJ, Brunak S
    J Mol Biol., 329, 663-74, 2003
    PubMed
    Analysis of two large functionally uncharacterized regions in the Methanopyrus kandleri AV19 genome
    Jensen LJ, Skovgaard M, Sicheritz-Ponten T, Jørgensen MK, Lundegaard C, Pedersen CC, Petersen N, Ussery D
    BMC Genomics, 4, 12, 2003
    PubMed
    Prediction of human protein function according to Gene Ontology categories
    Jensen LJ, Gupta R, Stærfeldt HH, Brunak S
    Bioinformatics, 19, 635-642, 2003
    PubMed

2002

    Prediction of protein function from sequence derived protein features
    Jensen LJ
    Ph.D. thesis, 2002
    Relevant URL
    Prediction of novel archaeal enzymes from sequence-derived features
    Jensen LJ, Skovgaard M, Brunak S
    Protein Science, 11, 2894-2898, 2002
    PubMed
    A new non-linear normalization method for reducing variability in DNA microarray experiments
    Workman C, Jensen LJ, Jarmer H, Berka R, Gautier L, Nielsen HB, Saxild HH, Nielsen C, Brunak S, Knudsen S
    Genome Biol., 3, research0048.1-0048.16, 2002
    PubMed
    The Atlas Visualisation of Genome-wide Information
    Skovgaard M, Jensen LJ, Friis C, Stærfeldt H-H, Worning P, Brunak S, Ussery D
    Methods in Microbiology, 33, 49-63, 2002
    Prediction of human protein function from post-translational modifications and localization features
    Jensen LJ, Gupta R, Blom N, Devos D, Tamames J, Kesmir C, Nielsen H, Stærfeldt HH, Rapacki K, Workman C, Andersen CAF, Knudsen S, Krogh A, Valencia A, Brunak S
    J. Mol. Biol., 319, 1257-1265, 2002
    PubMed

2001

    On the total number of genes and their length distribution in complete microbial genomes
    Skovgaard M, Jensen LJ, Brunak S, Ussery D, Krogh A
    Trends Genet., 17, 425-428, 2001
    PubMed
    Orphan protein function and its relation to glycosylation
    Gupta R, Jensen LJ, Brunak S
    Ernst Schering Research Foundation Proceedings, 38, Chapter 13, Springer-Verlag, 2001

2000

    Visualization of pathogenicity regions in bacteria
    Friis C, Jensen LJ, Ussery DW
    Genetica, 108, 47-51, 2000
    PubMed
    A DNA structural atlas for Escherichia coli
    Pedersen AG, Jensen LJ, Stærfeldt H, Brunak S, Ussery DW
    J. Mol.Biol., 299, 907-930, 2000
    PubMed
    Publication download
    Automatic discovery of regulatory patterns in promoter regions based on whole cell expression data and functional annotation
    Jensen LJ, Knudsen S
    Bioinformatics 16, 326-333, 2000
    PubMed
    Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima
    Worning P, Jensen LJ, Nielson KE, Brunak S, Ussery DW
    Nucleic Acids Res., 28, 706-709, 2000
    PubMed

1999

    Three views of microbial genomes
    Jensen LJ, Friis C, Ussery DW
    Res. Microbiol., 150, 773-777, 1999
    PubMed

2013 (3) 2010 (4) 2008 (2) 2007 (1) 2006 (3) 2005 (3) 2004 and before (17)