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2013
TIMP-1 increases expression and phosphorylation of proteins associated with drug resistance in breast cancer cells.
Hekmat O, Munk S, Fogh L, Yadav R, Francavilla C, Horn H, Wurtz SO, Schrohl AS, Damsgaard B, Romer MU, Belling K, Jensen NF, Gromova I, Bekker-Jensen DB, Moreira JM, Jensen LJ, Gupta R, Lademann U, Brunner N, Olsen JV, Stenvang J
J Proteome Res. 2013, 2013 |
PubMed
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Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.
Orlando L, Ginolhac A, Zhang G, Froese D, Albrechtsen A, Stiller M, Schubert M, Cappellini E, Petersen B, Moltke I, Johnson PL, Fumagalli M, Vilstrup JT, Raghavan M, Korneliussen T, Malaspinas AS, Vogt J, Szklarczyk D, Kelstrup CD, Vinther J, Dolocan A, Stenderup J, Velazquez AM, Cahill J, Rasmussen M, Wang X, Min J, Zazula GD, Seguin-Orlando A, Mortensen C, Magnussen K, Thompson JF, Weinstock J, Gregersen K, Røed KH, Eisenmann V, Rubin CJ, Miller DC, Antczak DF, Bertelsen MF, Brunak S, Al-Rasheid KA, Ryder O, Andersson L, Mundy J, Krogh A, Gilbert MT, Kjær K, Sicheritz-Ponten T, Jensen LJ, Olsen JV, Hofreiter M, Nielsen R, Shapiro B, Wang J, Willerslev E
Nature. 2013, 2013 |
PubMed
Relevant URL
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2010
Protein annotation in the era of personal genomics
Blicher T, Gupta R, Wesolowska A, Jensen LJ, Brunak S
Curr Opin Struct Biol, 2010 Apr 17, 2010 |
PubMed
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Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis
Olsen JV, Vermeulen M, Santamaria A, Kumar C, Miller ML, Jensen LJ, Gnad F, Cox J, Jensen TS, Nigg EA, Brunak S, Mann M
Sci Signal 12;3(104):ra3, 2010 |
PubMed
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Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results
Gauthier NP, Jensen LJ, Wernersson R, Brunak S, Jensen TS
Nucleic Acids Res. 38(Database issue):D699-702, 2010 |
PubMed
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Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis
Olsen JV, Vermeulen M, Santamaria A, Kumar C, Miller ML, Jensen LJ, Gnad F, Cox J, Jensen TS, Nigg EA, Brunak S, Mann M
Sci Signal. 12;3(104):ra3, 2010 |
PubMed
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2008
Circular reasoning rather than cyclic expression
Jensen LJ, de Lichtenberg U, Jensen TS, Brunak S, Bork P
Genome Biol. 2008;9(6):403. Epub 2008 Jun 23, 2008 |
PubMed
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Linear motif atlas for phosphorylation-dependent signaling.
Miller ML, Jensen LJ, Diella F, Jørgensen C, Tinti M, Li L, Hsiung M, Parker SA, Bordeaux J, Sicheritz-Ponten T, Olhovsky M, Pasculescu A, Alexander J, Knapp S, Blom N, Bork P, Li S, Cesareni G, Pawson T, Turk BE, Yaffe MB, Brunak S, Linding R
Science Signaling, 2008 Sep 2;1(35):ra2, 2008 |
PubMed
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2007
Evolution of cell cycle control: same molecular machines, different regulation
de Lichtenberg U, Jensen TS, Brunak S, Bork P, Jensen LJ
Cell Cycle,1;6(15):1819-25, 2007 |
PubMed
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2006
Co-evolution of transcriptional and post-translational cell-cycle regulation
Jensen LJ, Jensen TS, de Lichtenberg U, Brunak S, Bork P
Nature, 443 (7111), 594-7, 2006 |
PubMed
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The more the merrier: comparative analysis of microarray studies on cell cycle-regulated genes in fission yeast
Marguerat S, Jensen TS, de Lichtenberg U, Wilhelm BT, Jensen LJ, Bahler J
Yeast, 23, 261-77, 2006 |
PubMed
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Origin of Replication in Circular Prokaryotic Chromosomes
Worning P, Jensen LJ, Hallin PF, Stærfeldt HH, Ussery DW
Environ Microbiol, 8, 353-61, 2006 |
PubMed
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2005
Crystal ball. Systems biology: in the broadest sense of the word
Ussery DW, de Lichtenberg U, Jensen LJ
Environmental Microbiology, 7, 482-83, 2005 |
PubMed
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Comparison of computational methods for the identification of cell cycle-regulated genes
de Lichtenberg U, Jensen LJ, Fausboll A, Jensen TS, Bork P, Brunak S
Bioinformatics, 1;21, 1164-71, 2005 |
PubMed
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Dynamic Complex Formation During the Yeast Cell Cycle
de Lichtenberg U, Jensen LJ, Brunak S, Bork P
Science, 307, 724-727, 2005 |
PubMed
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2004
Feature-based prediction of non-classical and leaderless protein secretion
Bendtsen JD, Jensen LJ, Blom N, Von Heijne G, Brunak S
Protein Engineering Design and Selection, 17, 349-56, 2004 |
PubMed
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2003
Functionality of System Components: Conservation of Protein Function in Protein Feature Space
Jensen LJ, Ussery DW, Brunak S
Genome Res., 13, 2444-9, 2003 |
PubMed
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Protein feature based identification of cell cycle regulated proteins in yeast
de Lichtenberg U, Jensen TS, Jensen LJ, Brunak S
J Mol Biol., 329, 663-74, 2003 |
PubMed
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Analysis of two large functionally uncharacterized regions in the Methanopyrus kandleri AV19 genome
Jensen LJ, Skovgaard M, Sicheritz-Ponten T, Jørgensen MK, Lundegaard C, Pedersen CC, Petersen N, Ussery D
BMC Genomics, 4, 12, 2003 |
PubMed
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Prediction of human protein function according to Gene Ontology categories
Jensen LJ, Gupta R, Stærfeldt HH, Brunak S
Bioinformatics, 19, 635-642, 2003 |
PubMed
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2002
Prediction of protein function from sequence derived protein features
Jensen LJ
Ph.D. thesis, 2002 |
Relevant URL
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Prediction of novel archaeal enzymes from sequence-derived features
Jensen LJ, Skovgaard M, Brunak S
Protein Science, 11, 2894-2898, 2002 |
PubMed
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A new non-linear normalization method for reducing variability in DNA microarray experiments
Workman C, Jensen LJ, Jarmer H, Berka R, Gautier L, Nielsen HB, Saxild HH, Nielsen C, Brunak S, Knudsen S
Genome Biol., 3, research0048.1-0048.16, 2002 |
PubMed
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The Atlas Visualisation of Genome-wide Information
Skovgaard M, Jensen LJ, Friis C, Stærfeldt H-H, Worning P, Brunak S, Ussery D
Methods in Microbiology, 33, 49-63, 2002 |
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Prediction of human protein function from post-translational modifications and localization features
Jensen LJ, Gupta R, Blom N, Devos D, Tamames J, Kesmir C, Nielsen H, Stærfeldt HH, Rapacki K, Workman C, Andersen CAF, Knudsen S, Krogh A, Valencia A, Brunak S
J. Mol. Biol., 319, 1257-1265, 2002 |
PubMed
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2001
On the total number of genes and their length distribution in complete microbial genomes
Skovgaard M, Jensen LJ, Brunak S, Ussery D, Krogh A
Trends Genet., 17, 425-428, 2001 |
PubMed
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Orphan protein function and its relation to glycosylation
Gupta R, Jensen LJ, Brunak S
Ernst Schering Research Foundation Proceedings, 38, Chapter 13, Springer-Verlag, 2001 |
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2000
Visualization of pathogenicity regions in bacteria
Friis C, Jensen LJ, Ussery DW
Genetica, 108, 47-51, 2000 |
PubMed
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A DNA structural atlas for Escherichia coli
Pedersen AG, Jensen LJ, Stærfeldt H, Brunak S, Ussery DW
J. Mol.Biol., 299, 907-930, 2000 |
PubMed
Publication download
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Automatic discovery of regulatory patterns in promoter regions based on whole cell expression data and functional annotation
Jensen LJ, Knudsen S
Bioinformatics 16, 326-333, 2000 |
PubMed
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Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima
Worning P, Jensen LJ, Nielson KE, Brunak S, Ussery DW
Nucleic Acids Res., 28, 706-709, 2000 |
PubMed
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1999
Three views of microbial genomes
Jensen LJ, Friis C, Ussery DW
Res. Microbiol., 150, 773-777, 1999 |
PubMed
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This file was last modified Friday 31st 2013f May 2013 08:37:15 GMT |
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