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2014 (2) 2013 (1) 2011 (1) 2009 (1) 2008 (2) 2007 (3) 2006 and before (15)

2014

    Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes.
    Nielsen HB, Almeida M, Juncker AS, Rasmussen S, Li J, Sunagawa S, Plichta DR, Gautier L, Pedersen AG, Le Chatelier E, Pelletier E, Bonde I, Nielsen T, Manichanh C, Arumugam M, Batto JM, Quintanilha Dos Santos MB, Blom N, Borruel N, Burgdorf KS, Boumezbeur F, Casellas F, Doré J, Dworzynski P, Guarner F, Hansen T, Hildebrand F, Kaas RS, Kennedy S, Kristiansen K, Kultima JR, Léonard P, Levenez F, Lund O, Moumen B, Le Paslier D, Pons N, Pedersen O, Prifti E, Qin J, Raes J, Sørensen S, Tap J, Tims S, Ussery DW, Yamada T; MetaHIT Consortium, Renault P, Sicheritz-Ponten T, Bork P, Wang J, Brunak S, Ehrlich SD Nat Biotechnol
    Nature Biotechnology. 2014 Jul 6., 2014
    PubMed
    Bacterial diversity in snow on North Pole ice floes.
    Hauptmann AL, Stibal M, Bælum J, Sicheritz-Pontén T, Brunak S, Bowman JS, Hansen LH, Jacobsen CS, Blom N
    Extremophiles. 2014 Jun 21, 2014
    PubMed
    Springer Link

2013

    The SH2 domain interaction landscape.
    Tinti M, Kiemer L, Costa S, Miller ML, Sacco F, Olsen JV, Carducci M, Paoluzi S, Langone F, Workman CT, Blom N, Machida K, Thompson CM, Schutkowski M, Brunak S, Mann M, Mayer BJ, Castagnoli L, Cesareni G
    Cell Reports. 2013 Apr 25;3(4):1293-305., 2013
    PubMed

2011

    Microbial community structure of Arctic multiyear sea ice and surface seawater by 454 sequencing of the 16S RNA gene
    Bowman JS, Rasmussen S, Blom N, Deming JW, Rysgaard S, Sicheritz-Ponten T
    ISME J 6(1):11-20 doi:10.1038/ismej.2011.76, 2011
    PubMed

2009

    Kinase-specific prediction of protein phosphorylation sites.
    Miller ML, Blom N
    Methods in Molecular Biology . 527:299-310, x doi:10.1007/978-1-60327-834-8_22, 2009
    PubMed

2008

    NetPhosBac - A predictor for Ser/Thr phosphorylation sites in bacterial proteins.
    Miller ML, Soufi B, Jers C, Blom N, Macek B, Mijakovic I
    Proteomics 9(1):116-25 doi:10.1002/pmic.200800285, 2008
    PubMed
    Linear motif atlas for phosphorylation-dependent signaling.
    Miller ML, Jensen LJ, Diella F, Jørgensen C, Tinti M, Li L, Hsiung M, Parker SA, Bordeaux J, Sicheritz-Ponten T, Olhovsky M, Pasculescu A, Alexander J, Knapp S, Blom N, Bork P, Li S, Cesareni G, Pawson T, Turk BE, Yaffe MB, Brunak S, Linding R
    Science Signaling 1(35):ra2 doi:10.1126/scisignal.1159433, 2008
    PubMed

2007

    Motif decomposition of the phosphotyrosine proteome reveals a new N-terminal binding motif for SHIP2
    Miller ML, Hanke S, Hinsby AM, Friis C, Brunak S, Mann M, Blom N
    Mol. Cell Proteomics 7(1):181-92, 2007
    PubMed
    Midbrain expression of Delta-like 1 homologue is regulated by GDNF and is associated with dopaminergic differentiation
    Christophersen NS, Gronborg M, Petersen TN, Fjord-Larsen L, Jorgensen JR, Juliusson B, Blom N, Rosenblad C, Brundin P
    Exp. Neurol. 204(2):791-801, 2007
    PubMed
    Prediction of protein phosphorylation sites in yeast
    Ingrell CR, Miller ML, Jensen ON, Blom N
    Bioinformatics 23(7):895-7, 2007
    PubMed

2006

    Identification of novel genes regulated in the developing human ventral mesencephalon
    Jorgensen JR, Juliusson B, Henriksen KF, Hansen C, Knudsen S, Petersen TN, Blom N, Seiger A, Wahlberg LU
    Exp. Neurol. 198(2):427-37, 2006
    PubMed

2004

    Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins
    Diella F, Cameron S, Gemünd C, Linding R, Via A, Kuster B, Sicheritz-Pontén T, Blom N, Gibson TJ
    BMC Bioinformatics 5:79, 2004
    PubMed
    NetAcet: prediction of N-terminal acetylation sites
    Kiemer L, Bendtsen JB, Blom N
    Bioinformatics 21(7):1269-70, 2004
    PubMed
    Feature-based prediction of non-classical and leaderless protein secretion
    Bendtsen JD, Jensen LJ, Blom N, Von Heijne G, Brunak S
    Protein Eng. Des. Sel. 17(4):349-56, 2004
    PubMed
    Coronavirus 3CLpro proteinase cleavage sites: possible relevance to SARS virus pathology
    Kiemer L, Lund O, Brunak S, Blom N
    BMC Bioinformatics 5:72, 2004
    PubMed
    Identification of phosphorylation sites in protein kinase A substrates using artificial neural networks and mass spectrometry
    Hjerrild M, Stensballe A, Rasmussen TE, Kofoed CB, Blom N, Sicheritz-Ponten T, Larsen MR, Brunak S, Jensen ON, Gammeltoft S
    Journal of Proteome Research. 3(3):426-33, 2004
    PubMed
    Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence
    Blom N, Sicheritz-Ponten T, Gupta R, Gammeltoft S, Brunak S
    Proteomics 4(6):1633-49, 2004
    PubMed
    Prediction of proprotein convertase cleavage sites
    Duckert P, Brunak S, Blom N
    Protein Engineering, Design & Selection, 17, 107-112, 2004

2002

    Prediction of human protein function from post-translational modifications and localization features
    Jensen LJ, Gupta R, Blom N, Devos D, Tamames J, Kesmir C, Nielsen H, Stærfeldt HH, Rapacki K, Workman C, Andersen CAF, Knudsen S, Krogh A, Valencia A, Brunak S
    J. Mol. Biol. 319(5):1257-65, 2002
    PubMed

2000

    In vivo protection of nigral dopamine neurons by lentiviral gene transfer of the novel GDNF-family member neublastin/artemin
    Rosenblad C, Gronborg M, Hansen C, Blom N, Meyer M, Johansen J, Dago L, Kirik D, Patel UA, Lundberg C, Trono D, Bjorklund A, Johansen TE
    Mol. Cell. Neurosci. 15(2):199-214, 2000
    PubMed

1999

    Sequence and structure-based prediction of eukaryotic protein phosphorylation sites
    Blom N, Gammeltoft S, Brunak S
    J. Mol. Biol. 294(5):1351-62, 1999
    PubMed
    PhosphoBase, a database of phosphorylation sites: release 2.0
    Kreegipuu A, Blom N, Brunak S
    Nucleic Acids Res. 27(1):237-9, 1999
    PubMed

1998

    Statistical analysis of protein kinase specificity determinants
    Kreegipuu A, Blom N, Brunak S, Järv J
    FEBS Letters, 430, 45-50, 1998
    PhosphoBase: a database of phosphorylation sites
    Blom N, Kreegipuu A, Brunak S
    Nucleic Acids Res. 26(1):382-6, 1998
    PubMed

1996

    Cleavage site analysis in picornaviral polyproteins: Discovering cellular targets with neural networks
    Blom N, Hansen J, Blaas D, Brunak S
    Protein Sci. 5(11):2203-16, 1996
    PubMed

2014 (2) 2013 (1) 2011 (1) 2009 (1) 2008 (2) 2007 (3) 2006 and before (15)