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2012
Bayesian prediction of bacterial optimum temperature based on genome sequences
Jensen DB, Vest TC, Hallin PF, Pedersen AG, Ussery D
BMC Genomics, 2012 |
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2010
Genomic Characterization of Campylobacter jejuni strain M1
Friis C, Wassenaar T, Javed M, Snipen L, Lagesen K, Hallin P, Newell D, Toszeghy M, RIdley A, Manning G, Ussery D
PLoS ONE, 2010 |
PubMed
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Parallel Genetic and Phenotypic Evolution of DNA Superhelicity in Experimental Populations of Escherichia coli
Crozat E, Winkworth C, Gaffé J, Hallin PF, Riley MA, Lenski RE, Schneider D
Mol. Biol. Evol doi:10.1093/molbev/msq099, 2010 |
PubMed
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On the Origins of a Vibrio species
Vesth T, Wassenaar TM, Hallin PF, Snipen L, Lagesen K, , Ussery DW
Microbial Ecology, 59:1-13, 2010 |
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2009
Computational tools and Interoperability in Comparative Genomics
Hallin PF
Ph.D. thesis, 2009 |
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GeneWiz browser: An Interactive Tool for Visualizing Sequenced Chromosomes
Hallin PF, Stærfeldt HH, Rotenberg E, Binnewies TT, Benham CJ, , Ussery DW
Standards in Genomic Sciences, 1:204-215, 2009 |
Relevant URL
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2008
Global features of the Alcanivorax borkumensis SK2 genome
Reva ON, Hallin PF, Willenbrock H, Sicheritz-Ponten T, Tummler B, Ussery DW
Environ Microbiol. 2008 Mar;10(3):614-25 and Mol Genet Genomics, 279:523-534, (2008), 2008 |
PubMed
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The genome BLASTatlas-a GeneWiz extension for visualization ofwhole-genome homology
Hallin PF, Binnewies TT, Ussery DW
Mol Biosyst 4:363-71 (2008), 2008 |
PubMed
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2007
The Complete Genome Sequence and Analysis of the EpsilonproteobacteriumArcobacter butzleri
Miller WG, Parker CT, Rubenfield M, Mendz GL, Wosten MM, Ussery DW, Stolz JF, Binnewies TT, Hallin PF, Wang G, Malek JA, Rogosin A, Stanker LH, Mandrell RE
PLoS ONE. 2007 Dec 26;2(12):e1358., 2007 |
PubMed
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Characterization of probiotic Escherichia coli isolates with a novel pan-genome microarray
Willenbrock H, Hallin PF, Wassenaar TM, Ussery DW
Genome Biol 8:R267 (2007), 2007 |
PubMed
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RNAmmer: consistent and rapid annotation of ribosomal RNA genes
Lagesen K, Hallin P, Rødland EA, Stærfeldt HH, Rognes T, Ussery DW
Nucleic Acids Research 35:3100-3108,(2007)., 2007 |
PubMed
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2006
Structural features of fungal genomes
Wanchanthuek P, Hallin PF, Gouveia-Oliveira R, Ussery DW
Topics in Current Genetics, 15, 47-77, 2006 |
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Ten years of bacterial genome sequencing: comparative-genomics-based discoveries
Binnewies TT, Motro Y, Hallin PF, Lund O, Dunn D, La T, Hampson DJ, Bellgard M, Wassenaar TM, Ussery DW
Functional and Integrative Genomics, 6, [Epub ahead of print], 2006 |
PubMed
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Origin of Replication in Circular Prokaryotic Chromosomes
Worning P, Jensen LJ, Hallin PF, Stærfeldt HH, Ussery DW
Environ Microbiol, 8, 353-61, 2006 |
PubMed
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2005
Genome Update: Protein secretion systems in 225 bacterial genomes
Binnewies TT, Bendtsen JD, Hallin PF, Nielsen N, Wassenaar TM, Pedersen MB, Klemm P, Ussery DW
Microbiology., 151(Pt 4):1013-6, 2005 |
PubMed
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Genome opdate: Protein secretion systems in 225 bacterial genomes
Bennewies TT, Bendtsen JD, Hallin PF, Nielsen N, Wassenaar TM, Pedersen MB, Klemm P, Ussery DW
Microbiology, 151, 1013-1016, 2005 |
PubMed
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Genome update: Prediction of secreted proteins in 225 bacterial proteomes
Bendtsen JD, Binnewies TT, Hallin PF, Sicheritz-Pontén T, Ussery DW
Microbiology, 151, 1725-1727, 2005 |
PubMed
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Genome update: Prediction of membrane proteins in prokaryotic genomes
Bendtsen JD, Binnewies TT, Hallin PF, Ussery DW
Microbiology, 151, 2119-2121, 2005 |
PubMed
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Genome update: Sigma factors in 240 bacterial genomes
Kiil K, Binnewies TT, Sicheritz-Pontén T, Willenbrock H, Hallin PF, Wassenaart TM, Ussery DW
Microbiology-SGM, 151, 3147-3150, 2005 |
PubMed
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Genome Update: proteome comparisons
Binnewies TT, Hallin PF, Staerfeldt HH, Ussery DW
Microbiology, 151, 1-4, 2005 |
PubMed
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Genome update: 2D clustering of bacterial genomes
Willenbrock H, Binnewies TT, Hallin PF, Ussery DW
Microbiology, 151, 333-6, 2005 |
PubMed
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Genome update: base skews in 200+ bacterial chromosomes
Hallin PF, Nielsen N, Devine KM, Binnewies TT, Willenbrock H, Ussery DW
Microbiology, 151, 633-7, 2005 |
PubMed
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2004
Genome update: correlation of bacterial genomic properties
Hallin PF, Coenye T, Binnewies TT, Jarmer H, Staerfeldt HH, Ussery DW
Microbiology, 150, 3899-903, 2004 |
PubMed
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Genome Update: DNA repeats in bacterial genomes
Ussery DW, Binnewies TT, Gouveia-Oliveira R, Jarmer H, Hallin PF
Microbiology 150, 3519-21, 2004 |
PubMed
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Genome Update: alignment
Ussery DW, Jensen MS, Poulsen TR, Hallin PF
Microbiology 150, 2491-3, 2004 |
PubMed
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Genome update: chromosome atlases
Hallin PF, Binnewies TT, Ussery DW
Microbiology, 150, 3091-3, 2004 |
PubMed
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Genome update: promoter profiles
Ussery DW, Tindbaek N, Hallin PF
Microbiology, 150, 2791-3, 2004 |
PubMed
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Genome update: alignment of bacterial chromosomes
Ussery DW, Jensen MS, Poulsen TR, Hallin PF
Microbiology, 150, 2491-3, 2004 |
PubMed
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Genome Update: annotation quality in sequenced microbial genomes
Ussery DW, Hallin PF
Microbiology, 150, 2015-7, 2004 |
PubMed
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CBS genome atlas database: a dynamic storage for bioinformatic results and sequence data
Hallin PF, Ussery DW
Bioinformatics, 12;20, 3682-6, 2004 |
PubMed
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Genome Update: tRNAs in sequenced microbial genomes
Ussery DW, Hallin PF, Lagesen K, Wassenaar TM
Microbiology, 150, 1603-6, 2004 |
PubMed
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Genome update: rRNAs in sequenced microbial genomes
Ussery DW, Hallin PF, Lagesen K, Coenye T
Microbiology, 150, 1113-5, 2004 |
PubMed
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Genome Update: AT content in sequenced prokaryotic genomes
Ussery DW, Hallin PF
Microbiology, 150, 749-52, 2004 |
PubMed
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Genome Update: length distributions of sequenced prokaryotic genomes
Ussery DW, Hallin PF
Microbiology, 150, 513-16, 2004 |
PubMed
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Books
Tools for comparison of bacterial genomes
Wassenaar TM, Binnewies TT, Hallin PF, Ussery DW
Microbiology of Hydrocarbons, Oils, Lipids, and Derived Compounds, (Springer-Verlag, Heidelberg, Germany), 2009 |
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This file was last modified Friday 31st 2013f May 2013 08:37:15 GMT |
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