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2014 (4) 2013 (6) 2012 (2) 2011 (2) 2010 (3) 2004 (3) 2003 and before (10)

2014

    Genomic profiling of thousands of candidate polymorphisms predicts risk of relapse in 778 Danish and German childhood acute lymphoblastic leukemia patients.
    Wesolowska A, Borst L, Dalgaard MD, Yadav R, Rasmussen KK, Wehner PS, Rasmussen M, Orntoft TF, Nordentoft I, Koehler R, Bartram CR, Schrappe M, Sicheritz-Ponten T, Gautier L, Marquart H, Madsen HO, Brunak S, Stanulla M, Gupta R, Schmiegelow K
    Leukemia. 2014 Jul 3., 2014
    PubMed
    Discovery of biomarkers for glycaemic deterioration before and after the onset of type 2 diabetes: rationale and design of the epidemiological studies within the IMI DIRECT Consortium.
    Koivula RW, Heggie A, Barnett A, Cederberg H, Hansen TH, Koopman AD, Ridderstråle M, Rutters F, Vestergaard H, Gupta R, Herrgård S, Heymans MW, Perry MH, Rauh S, Siloaho M, Teare HJ, Thorand B, Bell J, Brunak S, Frost G, Jablonka B, Mari A, McDonald TJ, Dekker JM, Hansen T, Hattersley A, Laakso M, Pedersen O, Koivisto V, Ruetten H, Walker M, Pearson E, Franks PW; DIRECT Consortium
    Diabetologia. 2014 Jun;57(6):1132-42., 2014
    PubMed
    Choice of bacterial DNA extraction method from fecal material influences community structure as evaluated by metagenomic analysis.
    Wesolowska A, Bahl MI, Carvalho V, Kristiansen K, Sicheritz-Pontén T, Gupta R, Licht TR
    Microbiome. 2014 Jun 5;2:19, 2014
    PubMed
    The genome of a Late Pleistocene human from a Clovis burial site in western Montana.
    Rasmussen M, Anzick SL, Waters MR, Skoglund P, DeGiorgio M, Stafford TW Jr, Rasmussen S, Moltke I, Albrechtsen A, Doyle SM, Poznik GD, Gudmundsdottir V, Yadav R, Malaspinas AS, White SS 5th, Allentoft ME, Cornejo OE, Tambets K, Eriksson A, Heintzman PD, Karmin M, Korneliussen TS, Meltzer DJ, Pierre TL, Stenderup J, Saag L, Warmuth VM, Lopes MC, Malhi RS, Brunak S, Sicheritz-Ponten T, Barnes I, Collins M, Orlando L, Balloux F, Manica A, Gupta R, Metspalu M, Bustamante CD, Jakobsson M, Nielsen R, Willerslev E
    Nature. 2014 Feb 13;506(7487):225-9., 2014
    PubMed

2013

    Prediction of Disease Causing Non-Synonymous SNPs by the Artificial Neural Network Predictor NetDiseaseSNP
    Johansen MB, Izarzugaza JM, Brunak S, Petersen TN, Gupta R
    PLoS ONE 8(7):e68370 doi:10.1371/journal.pone.0068370, 2013
    PubMed
    TIMP1 overexpression mediates resistance of MCF-7 human breast cancer cells to fulvestrant and down-regulates progesterone receptor expression.
    Bjerre C, Vinther L, Belling KC, Würtz SO, Yadav R, Lademann U, Rigina O, Do KN, Ditzel HJ, Lykkesfeldt AE, Wang J, Nielsen HB, Brünner N, Gupta R, Schrohl AS, Stenvang J
    Tumour Biology. 34(6):3839-51 doi:10.1007/s13277-013-0969-7, 2013
    PubMed
    TIMP-1 increases expression and phosphorylation of proteins associated with drug resistance in breast cancer cells.
    Hekmat O, Munk S, Fogh L, Yadav R, Francavilla C, Horn H, Wurtz SO, Schrohl AS, Damsgaard B, Romer MU, Belling K, Jensen NF, Gromova I, Bekker-Jensen DB, Moreira JM, Jensen LJ, Gupta R, Lademann U, Brunner N, Olsen JV, Stenvang J
    Journal of Proteome Research. 12(9):4136-51 doi:10.1021/pr400457u, 2013
    PubMed
    Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization
    Bønnelykke K, Matheson MC, Pers TH, Granell R, Strachan DP, Alves AC, Linneberg A, Curtin JA, Warrington NM, Standl M, Kerkhof M, Jonsdottir I, Bukvic BK, Kaakinen M, Sleimann P, Thorleifsson G, Thorsteinsdottir U, Schramm K, Baltic S, Kreiner-Møller E, Simpson A, St Pourcain B, Coin L, Hui J, Walters EH, Gupta R, et al
    Nature Genetics (2013), 2013
    Relevant URL
    Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology
    Steentoft C, Vakhrushev SY, Joshi HJ, Kong Y, Vester-Christensen MB, Schjoldager KT, Lavrsen K, Dabelsteen S, Pedersen NB, Marcos-Silva L, Gupta R, Paul Bennett E, Mandel U, Brunak S, Wandall HH, Levery SB, Clausen H
    The EMBO Journal . 32(10):1478-88 doi:10.1038/emboj.2013.79, 2013
    PubMed
    HExpoChem: a systems biology resource to explore human exposure to chemicals.
    Taboureau O, Jacobsen UP, Kalhauge C, Edsgärd D, Rigina O, Gupta R, Audouze K
    Bioinformatics 29(9):1231-2 doi:10.1093/bioinformatics/btt112, 2013
    PubMed

2012

    Genome-wide analysis of cytogenetic aberrations in ETV6/RUNX1-positive childhood acute lymphoblastic leukaemia
    Borst L, Wesolowska A, Joshi T, Borup R, Nielsen FC, Andersen MK, Jonsson OG, Wehner PS, Wesenberg F, Frost B-M, Gupta R, Schmiegelow K
    British Journal of Haematology 2012 Mar;, 2012
    A genome-wide association study of men with symptoms of testicular dysgenesis syndrome and its network biology interpretation.
    Dalgaard MD, Weinhold N, Edsgärd D, Silver JD, Pers TH, Nielsen JE, Jørgensen N, Juul A, Gerds TA, Giwercman A, Giwercman YL, Cohn-Cedermark G, Virtanen HE, Toppari J, Daugaard G, Jensen TS, Brunak S, Rajpert-De Meyts E, Skakkebæk NE, Leffers H, Gupta R
    Journal of Medical Genetics, 2012
    Relevant URL

2011

    An Aboriginal Australian Genome Reveals Separate Human Dispersals into Asia
    Rasmussen M, Guo X, Wang Y, Lohmueller KE, Rasmussen S, Albrechtsen A, Skotte L, Lindgren S, Metspalu M, Jombart T, Kivisild T, Zhai W, Eriksson A, Manica A, Orlando L, De La Vega F, Tridico S, Metspalu E, Nielsen K, Ávila-Arcos MA, Moreno-Mayar JV, Muller C, Dortch J, Gilbert MTP, Lund O, Wesolowska A, Karmin M, Weinert LA, Wang B, Li J, Tai S, Xiao F, Hanihara T, van Driem G, Jha AR, Ricaut FX, de Knijf P, Migliano AB, Gallego-Romero I, Kristiansen K, Lambert DM, Brunak S, Forster P, Brinkmann B, Nehlich O, Bunce M, Richards M, Gupta R, Bustamante CD, Krogh A, Foley RA, Lahr MM, Balloux F, Sichertitz-Pontén T, Villems R, Nielsen R, Jun W, Willerslev E
    Science 334(6052):94-8 doi:10.1126/science.1211177, 2011
    PubMed
    Cost-effective multiplexing before capture allows screening of 25 000 clinically relevant SNPs in childhood acute lymphoblastic leukemia
    Wesolowska A, Dalgaard MD, Borst L, Gautier L, Bak M, Weinhold N, Nielsen BF, Helt LR, Audouze K, Nersting J, Tommerup N, Brunak S, Sicheritz-Ponten T, Leffers H, Schmiegelow K, Gupta R
    Leukemia 25(6):1001-6 doi:10.1038/leu.2011.32, 2011
    PubMed

2010

    Prediction of Glycosylation Sites in Proteins
    Julenius K, Johansen M, Zhang Y, Brunak S, Gupta R
    Bioinformatics for Glycobiology and Glycomics, 2010
    Protein annotation in the era of personal genomics
    Blicher T, Gupta R, Wesolowska A, Jensen LJ, Brunak S
    Curr. Opin. Struct. Biol. 20(3):335-41 doi:10.1016/j.sbi.2010.03.008, 2010
    PubMed
    Ancient Human Genome Sequence of an Extinct Palaeo-Eskimo
    Rasmussen M, Li Y, Lindgreen S, Pedersen JS, Albrechtsen A, Moltke I, Metspalu M, Metspalu E, Kivisild T, Gupta R, Bertalan M, Nielsen K, Gilbert MTP, Wang Y, Raghavan M, Campos PF, Kamp HM, Wilson AS, Gledhill A, Tridico S, Bunce M, Lorenzen ED, Binladen J, Guo X, Zhao J, Zhang X, Zhang H, Li Z, Chen M, Orlando L, Kristiansen K, Bak M, Tommerup N, Bendixen C, Pierre TL, Grønnow B, Meldgaard M, Andreasen C, Fedorova SA, Osipova LP, Higham TFG, Ramsey CB, Hansen TV, Nielsen FC, Crawford MH, Brunak S, Sicheritz-Ponten T, Villems R, Nielsen R, Krogh A, Wang J, Willerslev E
    Nature 463(7282):757-62 doi:10.1038/nature08835, 2010
    PubMed

2004

    Prediction, conservation analysis, and structural characterization of mammalian mucin-type O-glycosylation sites
    Julenius K, Mølgaard A, Gupta R, Brunak S
    Glycobiology 15(2):153-64, 2004
    PubMed
    Analysis and prediction of leucine-rich nuclear export signals
    La Cour T, Kiemer L, Mølgaard A, Gupta R, Skriver K, Brunak S
    Protein Eng. Des. Sel. 17(6):527-36, 2004
    PubMed
    Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence
    Blom N, Sicheritz-Ponten T, Gupta R, Gammeltoft S, Brunak S
    Proteomics 4(6):1633-49, 2004
    PubMed

2003

    Plasmodium falciparum merozoite surface protein 1
    Hoessli DC, Poincelet M, Gupta R, Ilangumaran S, Nasir-ud-Din
    Eur. J. Biochem. 270(2):366-75, 2003
    PubMed
    Prediction of human protein function according to Gene Ontology categories
    Jensen LJ, Gupta R, Stærfeldt HH, Brunak S
    Bioinformatics 19(5):635-42, 2003
    PubMed
    NESbase version 1.0: a database of nuclear export signals
    La Cour T, Gupta R, Rapacki K, Skriver K, Poulsen FM, Brunak S
    Nucleic Acids Res. 31(1):393-6, 2003
    PubMed

2002

    Prediction of human protein function from post-translational modifications and localization features
    Jensen LJ, Gupta R, Blom N, Devos D, Tamames J, Kesmir C, Nielsen H, Stærfeldt HH, Rapacki K, Workman C, Andersen CAF, Knudsen S, Krogh A, Valencia A, Brunak S
    J. Mol. Biol. 319(5):1257-65, 2002
    PubMed
    Prediction of glycosylation across the human proteome and the correlation to protein function
    Gupta R, Brunak S
    Pac Symp Biocomput:310-22, 2002
    PubMed

2001

    On the estimation of number of events required for saturation mutagenesis of large genomes
    Phogat SK, Gupta R, Burma PK, Sen K, Pental D
    Curr. Sci., 80, 823-824, 2001
    Prediction of glycosylation sites in proteomes: from post-translational modifications to protein function
    Gupta R
    Ph.D. thesis, 2001
    Orphan protein function and its relation to glycosylation
    Gupta R, Jensen LJ, Brunak S
    Ernst Schering Research Foundation Proceedings, 38, Chapter 13, Springer-Verlag, 2001

1999

    Scanning the available Dictyostelium discoideum proteome for O-linked GlcNAc glycosylation sites using neural networks
    Gupta R, Jung E, Gooley AA, Williams KL, Brunak S, Hansen J
    Glycobiology 9(10):1009-22, 1999
    PubMed
    O-GLYCBASE version 4.0: a revised database of O-glycosylated proteins
    Gupta R, Birch H, Rapacki K, Brunak S, Hansen JE
    Nucleic Acids Res. 27(1):370-2, 1999
    PubMed

2014 (4) 2013 (6) 2012 (2) 2011 (2) 2010 (3) 2004 (3) 2003 and before (10)