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2011 (1) 2010 (1) 2009 (2) 2007 (7) 2006 (3) 2005 (4) 2003 and before (2)

2011

    The strength of intron donor splice sites in human genes displays a bell-shaped pattern
    Wang K, Wernersson R, Brunak S
    Bioinformatics. 2011 Nov 15;27(22):3079-84. Epub 2011 Oct 12., 2011
    Relevant URL

2010

    Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results
    Gauthier NP, Jensen LJ, Wernersson R, Brunak S, Jensen TS
    Nucleic Acids Res. 38:D699-702 doi:10.1093/nar/gkp1044, 2010
    PubMed

2009

    Optimization of the BLASTN substitution matrix for prediction of non-specific DNA microarray hybridization
    Aron C Eklund; Pia Friis; Rasmus Wernersson; Zoltan Szallasi
    Nucleic Acids Res. 38(4):e27 doi:10.1093/nar/gkp1116, 2009
    PubMed
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    InterMap3D: predicting and visualizing co-evolving protein residues
    Gouveia-Oliveira R, Roque FS, Wernersson R, Sicheritz-Ponten T, Sackett PW, Mølgaard A, Pedersen AG
    Bioinformatics 25(15):1963-5 doi:10.1093/bioinformatics/btp335, 2009
    PubMed
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2007

    Forsg med ny online eksamensform i \\
    Wernersson R
    DTU Avisen, 2007
    Dice & DNA
    Wernersson R
    BioScience Education e-journal, (in press), 2007
    CycleBase.org - a comprehensive multi-organism online database of cell-cycle experiments
    Gauthier NP, Jensen TS, de Lichtenberg U, Wernersson R, Larsen ME, Brunak S
    Nucleic Acids Res. (in press), 2007
    Web
    Probe Selection for DNA Microarrays using OligoWiz
    Wernersson R, Juncker AS, Nielsen HB
    Nat Protoc 2(11):2677-91, 2007
    PubMed
    SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation
    Panitz F, Stengaard H, Hornshøj H, Gorodkin J, Hedegaard J, Cirera S, Thomsen B, Madsen LB, Høj A, Vingborg RK, Zahn B, Wang X, Wang X, Wernersson R, Jørgensen CB, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Brunak S, Fredholm M, Bendixen C
    Bioinformatics 23(13):i387-91, 2007
    PubMed
    Web
    Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags
    Gorodkin J, Cirera S, Hedegaard J, Gilchrist MJ, Panitz F, Jørgensen C, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Rosenkilde C, Wang J, Li H, Li R, Liu B, Hu S, Dong W, Li W, Yu J, Wang J, Staerfeldt HH, Wernersson R, Madsen LB, Thomsen B, Hornshøj H, Bujie Z, Wang X, Wang X, Bolund L, Brunak S, Yang H, Bendixen C, Fredholm M
    Genome Biol. 8(4):R45, 2007
    PubMed
    Web
    Improving comparability between microarray probe signals by thermodynamic intensity correction
    Bruun GM, Wernersson R, Juncker AS, Willenbrock H, Nielsen HB
    Nucleic Acids Res. 35(7):e48, 2007
    PubMed
    Web

2006

    FeatureMap3D - a tool to map protein features and sequence conservation onto homologous structures in the PDB
    Wernersson R, Rapacki K, Staerfeldt HH, Sackett PW, Mølgaard A
    Nucleic Acids Res. 34:W84-8, 2006
    PubMed
    Web
    Virtual Ribosome - a comprehensive DNA translation tool with support for integration of sequence feature annotation
    Wernersson R
    Nucleic Acids Res. 34:W385-8, 2006
    PubMed
    Web
    An overabundance of phase 0 introns immediately after the start codon in eukaryotic genes
    Nielsen H, Wernersson R
    BMC Genomics 7:256, 2006
    PubMed
    Web

2005

    New weakly expressed cell cycle-regulated genes in yeast
    Hansen B, Schmidt P, Fausboll A, de Lichtenberg U, Wernersson R, Skøt Jensen T, Nielsen HB, Knudsen S, Brunak S
    Yeast 22(15):1191-201, 2005
    PubMed
    OligoWiz 2.0 - Integrating sequence feature annotation into the design of microarray probes
    Wernersson R, Nielsen HB
    EMBO J. 24(14):2579-89, 2005
    PubMed
    FeatureExtract--extraction of sequence annotation made easy
    Wernersson R
    Nucleic Acids Res. 33:W567-9, 2005
    PubMed
    Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
    Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L
    BMC Genomics 6:70, 2005
    PubMed

2003

    RevTrans: multiple alignment of coding DNA from aligned amino acid sequences
    Wernersson R, Pedersen AG
    Nucleic Acids Res. 31(13):3537-9, 2003
    PubMed
    PDF
    Design of oligonucleotides for microarrays and perspectives for design of multi-transcriptome arrays
    Nielsen HB, Wernersson R, Knudsen S
    Nucleic Acids Res. 31(13):3491-6, 2003
    PubMed

2011 (1) 2010 (1) 2009 (2) 2007 (7) 2006 (3) 2005 (4) 2003 and before (2)