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2009
Genome-wide gene expression profiling of SCID mice with T-cell-mediated Colitis
Brudzewsky D, Pedersen AE, Claesson MH, Gad M, Kristensen NN, Lage K, Jensen T, Tommerup N, Larsen LA, Knudsen S, Tümer Z
Scand J Immunol;69(5):437-46, 2009 |
PubMed
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2006
Transcriptome analysis of FSH and FSH variant stimulation in granulosa cells from IVM patients reveals novel regulated genes
Perlman S, Bouquin T, van den Hazel B, Jensen TH, Schambye HT, Knudsen S, Okkels JS
Mol Hum Reprod, 12, 135-44, 2006 |
PubMed
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Identification of novel genes regulated in the developing human ventral mesencephalon
Jorgensen JR, Juliusson B, Henriksen KF, Hansen C, Knudsen S, Petersen TN, Blom N, Seiger A, Wahlberg LU
Experimental neurology, 198(2):427-37, 2006 |
PubMed
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2005
Improvement of galactose uptake in Saccharomyces cerevisiae through overexpression of phosphoglucomutase: Example of transcript analysis as a tool in inverse metabolic engineering
Bro C, Knudsen S, Regenberg B, Olsson L, Nielsen J
Applied and environmental microbiology, 71, 6465-6472, 2005 |
PubMed
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New weakly expressed cell cycle-regulated genes in yeast
Hansen B, Schmidt P, Fausboll A, de Lichtenberg U, Wernersson R, Skøt Jensen T, Nielsen HB, Knudsen S, Brunak S
Yeast, 22, 1191-201, 2005 |
PubMed
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Implementation of a gene expression index cal-culation method based on the PDNN model
Nielsen HB, Gautier L, Knudsen S
Bioinformatics, 1;21, 687-8, 2005 |
PubMed
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2004
Identification of a core set of genes that signifies pathways underlying cardiac hypertrophy
Strøm CC, Kruhøffer M, Knudsen S, Stensgaard-Hansen F, Jonassen TE, Ørntoft TF, Haunsø S, Sheikh SP
Comparative and Functional Genomics 5, 459-470, 2004 |
PubMed
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Implementation of a gene expression index calculatation method based on the PDNN model
Bjørn Nielsen H, Gautier L, Knudsen S
Bioinformatics, 1;21, 687-8, 2004 |
PubMed
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Prediction of immunophenotype, treatment response, and relapse in childhood acute lymphoblastic leukemia using DNA microarrays
Willenbrock H, Juncker AS, Schmiegelow K, Knudsen S, Ryder LP
Leukemia, 18, 1270-7, 2004 |
PubMed
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The transcriptional activation program of human neutrophils in skin lesions supports their important role in wound healing
Theilgaard-Monch K, Knudsen S, Follin P, Borregaard N
Journal of Immunology, 172, 7684-93, 2004 |
PubMed
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2003
GenePublisher: Automated analysis of DNA microarray data
Knudsen S, Workman C, Sicheritz-Ponten T, Friis C
Nucleic Acids Res, 31, 3471-76, 2003 |
PubMed
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Design of oligonucleotides for microarrays and perspectives for design of multi-transcriptome arrays
Nielsen HB, Wernersson R, Knudsen S
Nucleic Acids Res.,31, 3491-6, 2003 |
PubMed
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Classification of Dukes´ B and C colorectal cancers using expression arrays
Frederiksen CM, Knudsen S, Laurberg S, Ørntoft TF
Journal of Cancer Research and Clinical Oncology, 129,263-271, 2003 |
PubMed
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2002
A new non-linear normalization method for reducing variability in DNA microarray experiments
Workman C, Jensen LJ, Jarmer H, Berka R, Gautier L, Nielsen HB, Saxild HH, Nielsen C, Brunak S, Knudsen S
Genome Biol., 3, research0048.1-0048.16, 2002 |
PubMed
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Neural network predicts sequence of TP53 gene based on DNA chip
Spicker S, Wikman F, Lu ML, Cordon-Cardo C, Workman C, Orntoft TF, Brunak S, Knudsen S
Bioinformatics, 18, 1133-1134, 2002 |
PubMed
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Avoiding cross hybridization by choosing nonredundant targets on cDNA arrays
Nielsen HB, Knudsen S
Bioinformatics, 18, 321-322, 2002 |
PubMed
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Prediction of human protein function from post-translational modifications and localization features
Jensen LJ, Gupta R, Blom N, Devos D, Tamames J, Kesmir C, Nielsen H, Stærfeldt HH, Rapacki K, Workman C, Andersen CAF, Knudsen S, Krogh A, Valencia A, Brunak S
J. Mol. Biol., 319, 1257-1265, 2002 |
PubMed
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Transcriptome analysis documents induced competence of Bacillus subtilis during nitrogen limiting conditions
Jarmer H, Berka R, Knudsen S, Saxild HH
FEMS Microbiology letters, 206, 197-200, 2002 |
PubMed
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Reproducibility of transcriptome analyses using oligonucleotide microarrays: an interlaboratory comparison of chemostat cultures of Saccharomyces cerevisiae
Piper M, Daran-Lapujade P, Bro C, Regenberg B, Knudsen S, Nielsen J, Pronk J
Journal of Biological Chemistry, 277, 37001-37008, 2002 |
PubMed
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2001
Sigma A recognition sites in the Bacillus subtilis genome
Jarmer H, Larsen TS, Krogh A, Saxild HH, Brunak S, Knudsen S
Microbiology, 147, 2417-24, 2001 |
PubMed
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Identification of gene expression patterns in superficial and invasive human bladder cancer
Thykjaer T, Workman C, Kruhoffer M, Demtroder K, Wolf H, Andersen LD, Frederiksen CM, Knudsen S, Ørntoft TF
Cancer Res., 61,2492-2499, 2001 |
PubMed
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2000
Automatic discovery of regulatory patterns in promoter regions based on whole cell expression data and functional annotation
Jensen LJ, Knudsen S
Bioinformatics 16, 326-333, 2000 |
PubMed
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The frequency of mutators in populations of Escherichia coli
Boe L, Danielsen M, Knudsen S, Petersen JB, Maymann J, Jensen PR
Mutat. Res., 448, 47-55, 2000 |
PubMed
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1999
Promoter 2.0: for the Recognition of PolII Promoter Sequences and
Knudsen S
Bioinformatics, 15, 356-361, 1999 |
PubMed
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1998
The effect of the lacY gene on the induction of IPTG inducible promoters, studied in Eschericia coli and Pseudomonas fluorescens
Hansen LH, Knudsen S, Sorensen SJ
Curr. Microbiol., 36, 341-347, 1998 |
PubMed
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1997
Kissing loops hide premature termination codons in pre-mRNA of selenoprotein genes and in genes containing programmed ribosomal frameshifts
Knudsen S, Brunak S
RNA, 3, 697-701, 1997 |
PubMed
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1992
G/C rich tract in 5' end of human introns
Engelbrecht J, Knudsen S, Brunak S
J. Mol. Biol., 227, 108-113, 1992 |
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1991
Prediction of human mRNA donor and acceptor sites from the DNA sequence
Brunak S, Engelbrecht J, Knudsen S
J. Mol. Biol., 220, 49-65, 1991 |
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1990
Neural Network Detects Errors in the assignment of pre-mRNA splice sites
Brunak S, Engelbrecht J, Knudsen S
Nucleic Acids Res., 18, 4797-4801, 1990 |
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Cleaning up gene databases
Brunak S, Engelbrecht J, Knudsen S
Nature, 343, 123, 1990 |
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Books
A Biologist's Guide to Analysis of DNA Microarray Data, 2nd edition
Knudsen S
John Wiley & Sons, New York, 2004 |
Details
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A Biologist's Guide to Analysis of DNA Microarray Data, 1st edition
Knudsen S
John Wiley & Sons, New York, 2002 |
Details
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This file was last modified Friday 31st 2013f May 2013 08:37:15 GMT |
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