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2010
Differences in two-component signal transduction proteins among the genus Brucella: implications for host preference and pathogenesis
Lavín JL, Binnewies TT, Pisabarro AG, Ussery DW, García-Lobo JM, Oguiza JA
Veterinary Microbiology, in the press, 2010 |
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2009
GeneWiz browser: An Interactive Tool for Visualizing Sequenced Chromosomes
Hallin PF, Stærfeldt HH, Rotenberg E, Binnewies TT, Benham CJ, , Ussery DW
Standards in Genomic Sciences, 1:204-215, 2009 |
Relevant URL
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2008
Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq.
Sittka A, Lucchini S, Papenfort K, Sharma CM, Rolle K, Binnewies TT, Hinton JC, Vogel J
PLoS Genet. 2008 Aug 22;4(8):e1000163, 2008 |
PubMed
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The complete genome sequence and analysis of the human pathogen Campylobacter lari
Miller WG, Wang G, Binnewies TT, Parker CT
Foodborne Pathog Dis. 2008 Aug;5(4):371-86, 2008 |
PubMed
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Molecular analysis of the emergence of pandemic Vibrio parahaemolyticus
Boyd EF, Cohen AL, Naughton LM, Ussery DW, Binnewies TT, Stine OC, Parent MA
BMC Microbiol. 2008 Jun 30;8:110, 2008 |
PubMed
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The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571
Lee KB, De Backer P, Aono T, Liu CT, Suzuki S, Suzuki T, Kaneko T, Yamada M, Tabata S, Kupfer DM, Najar FZ, Wiley GB, Roe B, Binnewies TT, Ussery DW, D’Haeze WD, Herder JD, Gevers D, Vereecke D, Holsters M, Oyaizu H
BMC Genomics. 2008 Jun 4;9:271., 2008 |
PubMed
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The genome BLASTatlas-a GeneWiz extension for visualization ofwhole-genome homology
Hallin PF, Binnewies TT, Ussery DW
Mol Biosyst 4:363-71 (2008), 2008 |
PubMed
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2007
The Complete Genome Sequence and Analysis of the EpsilonproteobacteriumArcobacter butzleri
Miller WG, Parker CT, Rubenfield M, Mendz GL, Wosten MM, Ussery DW, Stolz JF, Binnewies TT, Hallin PF, Wang G, Malek JA, Rogosin A, Stanker LH, Mandrell RE
PLoS ONE. 2007 Dec 26;2(12):e1358., 2007 |
PubMed
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Computational Analysis and Modeling of Bacterial Pathogenesis
Binnewies TT
PhD thesis, 2007 |
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2006
Ten years of bacterial genome sequencing: comparative-genomics-based discoveries
Binnewies TT, Motro Y, Hallin PF, Lund O, Dunn D, La T, Hampson DJ, Bellgard M, Wassenaar TM, Ussery DW
Functional and Integrative Genomics, 6, [Epub ahead of print], 2006 |
PubMed
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Genome update: purine strand bias in 280 bacterial genomes
Champ PC, Binnewies TT, Nielsen N, Zinman G, Kiil K, Wu H, Bohlin J, Ussery DW
Microbiology, 152(Pt 3): 579-83, 2006 |
PubMed
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2005
Genome Update: Protein secretion systems in 225 bacterial genomes
Binnewies TT, Bendtsen JD, Hallin PF, Nielsen N, Wassenaar TM, Pedersen MB, Klemm P, Ussery DW
Microbiology., 151(Pt 4):1013-6, 2005 |
PubMed
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Genome update: Prediction of secreted proteins in 225 bacterial proteomes
Bendtsen JD, Binnewies TT, Hallin PF, Sicheritz-Pontén T, Ussery DW
Microbiology, 151, 1725-1727, 2005 |
PubMed
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Genome update: Prediction of membrane proteins in prokaryotic genomes
Bendtsen JD, Binnewies TT, Hallin PF, Ussery DW
Microbiology, 151, 2119-2121, 2005 |
PubMed
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Genome update: Sigma factors in 240 bacterial genomes
Kiil K, Binnewies TT, Sicheritz-Pontén T, Willenbrock H, Hallin PF, Wassenaart TM, Ussery DW
Microbiology-SGM, 151, 3147-3150, 2005 |
PubMed
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Genome update: Distribution of two.component trensduction systems in 250 bacterial genomes
Kiil K, Ferchaud JB, David C, Binnewies T, Wu H, Sicheritz-Pontén T, Willenbrock H, Ussery DW
Microbiology, 151, 3447-3452, 2005 |
PubMed
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Genome Update: proteome comparisons
Binnewies TT, Hallin PF, Staerfeldt HH, Ussery DW
Microbiology, 151, 1-4, 2005 |
PubMed
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Genome update: 2D clustering of bacterial genomes
Willenbrock H, Binnewies TT, Hallin PF, Ussery DW
Microbiology, 151, 333-6, 2005 |
PubMed
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Genome update: base skews in 200+ bacterial chromosomes
Hallin PF, Nielsen N, Devine KM, Binnewies TT, Willenbrock H, Ussery DW
Microbiology, 151, 633-7, 2005 |
PubMed
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2004
Genome update: correlation of bacterial genomic properties
Hallin PF, Coenye T, Binnewies TT, Jarmer H, Staerfeldt HH, Ussery DW
Microbiology, 150, 3899-903, 2004 |
PubMed
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Genome Update: DNA repeats in bacterial genomes
Ussery DW, Binnewies TT, Gouveia-Oliveira R, Jarmer H, Hallin PF
Microbiology 150, 3519-21, 2004 |
PubMed
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Genome update: chromosome atlases
Hallin PF, Binnewies TT, Ussery DW
Microbiology, 150, 3091-3, 2004 |
PubMed
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Books
Genome comparison of bacterial pathogens
Wassenaar TM, Bohlin J, Binnewies TT, Ussery DW
chapter 1 in Genome Dynamics, volume 6 - Microbial Pathogenomics, (Karger AG publishers, Basel), 2009 |
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Tools for comparison of bacterial genomes
Wassenaar TM, Binnewies TT, Hallin PF, Ussery DW
Microbiology of Hydrocarbons, Oils, Lipids, and Derived Compounds, (Springer-Verlag, Heidelberg, Germany), 2009 |
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Genome Diversity of Pseudomonas aeruginosa
Klockgether J, Würdemann D, Wiehlmann L, Binnewies TT, Ussery DW, Tümmler B
Chapter 2 in Pseudomonas: Genomics and Molecular Biology, (Edited by: Pierre Cornelis, Caister Academic Press, 2008), 2008 |
Link to publisher
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Comparative Genomics of Pseudomonas
Kiil K, Binnewies TT, Willenbrock H, Hansen SK, Yang L, Jelsbak L, Ussery DW, Friis C
Chapter 1 in Pseudomonas: Model Organism, Pathogen, Cell Factory, (Edited by: B. H. A. Rehm, Wiley-VCH, 2008), 2008 |
Link to publisher
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This file was last modified Friday 31st 2013f May 2013 08:37:15 GMT |
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