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2010 (1) 2009 (1) 2008 (5) 2007 (2) 2006 (2) 2005 (8) 2004 and before (3) Books (4)

2010

    Differences in two-component signal transduction proteins among the genus Brucella: implications for host preference and pathogenesis
    Lavín JL, Binnewies TT, Pisabarro AG, Ussery DW, García-Lobo JM, Oguiza JA
    Veterinary Microbiology, in the press, 2010

2009

    GeneWiz browser: An Interactive Tool for Visualizing Sequenced Chromosomes
    Hallin PF, Stærfeldt HH, Rotenberg E, Binnewies TT, Benham CJ, , Ussery DW
    Standards in Genomic Sciences, 1:204-215, 2009
    Relevant URL

2008

    Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq.
    Sittka A, Lucchini S, Papenfort K, Sharma CM, Rolle K, Binnewies TT, Hinton JC, Vogel J
    PLoS Genet. 4(8):e1000163 doi:10.1371/journal.pgen.1000163, 2008
    PubMed
    The complete genome sequence and analysis of the human pathogen Campylobacter lari
    Miller WG, Wang G, Binnewies TT, Parker CT
    Foodborne Pathog. Dis. 5(4):371-86 doi:10.1089/fpd.2008.0101, 2008
    PubMed
    Molecular analysis of the emergence of pandemic Vibrio parahaemolyticus
    Boyd EF, Cohen AL, Naughton LM, Ussery DW, Binnewies TT, Stine OC, Parent MA
    BMC Microbiol. 8:110 doi:10.1186/1471-2180-8-110, 2008
    PubMed
    The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571
    Lee KB, De Backer P, Aono T, Liu CT, Suzuki S, Suzuki T, Kaneko T, Yamada M, Tabata S, Kupfer DM, Najar FZ, Wiley GB, Roe B, Binnewies TT, Ussery DW, D’Haeze WD, Herder JD, Gevers D, Vereecke D, Holsters M, Oyaizu H
    BMC Genomics 9:271 doi:10.1186/1471-2164-9-271, 2008
    PubMed
    The genome BLASTatlas-a GeneWiz extension for visualization ofwhole-genome homology
    Hallin PF, Binnewies TT, Ussery DW
    Mol Biosyst 4(5):363-71 doi:10.1039/b717118h, 2008
    PubMed

2007

    The Complete Genome Sequence and Analysis of the EpsilonproteobacteriumArcobacter butzleri
    Miller WG, Parker CT, Rubenfield M, Mendz GL, Wosten MM, Ussery DW, Stolz JF, Binnewies TT, Hallin PF, Wang G, Malek JA, Rogosin A, Stanker LH, Mandrell RE
    PLoS ONE 2(12):e1358, 2007
    PubMed
    Computational Analysis and Modeling of Bacterial Pathogenesis
    Binnewies TT
    PhD thesis, 2007

2006

    Ten years of bacterial genome sequencing: comparative-genomics-based discoveries
    Binnewies TT, Motro Y, Hallin PF, Lund O, Dunn D, La T, Hampson DJ, Bellgard M, Wassenaar TM, Ussery DW
    Functional and Integrative Genomics, 6, [Epub ahead of print], 2006
    PubMed
    Genome update: purine strand bias in 280 bacterial genomes
    Champ PC, Binnewies TT, Nielsen N, Zinman G, Kiil K, Wu H, Bohlin J, Ussery DW
    Microbiology (Reading, Engl.) 152:579-83, 2006
    PubMed

2005

    Genome Update: Protein secretion systems in 225 bacterial genomes
    Binnewies TT, Bendtsen JD, Hallin PF, Nielsen N, Wassenaar TM, Pedersen MB, Klemm P, Ussery DW
    Microbiology (Reading, Engl.) 151:1013-6, 2005
    PubMed
    Genome update: Prediction of secreted proteins in 225 bacterial proteomes
    Bendtsen JD, Binnewies TT, Hallin PF, Sicheritz-Pontén T, Ussery DW
    Microbiology (Reading, Engl.) 151:1725-7, 2005
    PubMed
    Genome update: Prediction of membrane proteins in prokaryotic genomes
    Bendtsen JD, Binnewies TT, Hallin PF, Ussery DW
    Microbiology (Reading, Engl.) 151:2119-21, 2005
    PubMed
    Genome update: Sigma factors in 240 bacterial genomes
    Kiil K, Binnewies TT, Sicheritz-Pontén T, Willenbrock H, Hallin PF, Wassenaart TM, Ussery DW
    Microbiology (Reading, Engl.) 151:3147-50, 2005
    PubMed
    Genome update: Distribution of two.component trensduction systems in 250 bacterial genomes
    Kiil K, Ferchaud JB, David C, Binnewies T, Wu H, Sicheritz-Pontén T, Willenbrock H, Ussery DW
    Microbiology (Reading, Engl.) 151:3447-52, 2005
    PubMed
    Genome Update: proteome comparisons
    Binnewies TT, Hallin PF, Staerfeldt HH, Ussery DW
    Microbiology (Reading, Engl.) 151:1-4, 2005
    PubMed
    Genome update: 2D clustering of bacterial genomes
    Willenbrock H, Binnewies TT, Hallin PF, Ussery DW
    Microbiology (Reading, Engl.) 151:333-6, 2005
    PubMed
    Genome update: base skews in 200+ bacterial chromosomes
    Hallin PF, Nielsen N, Devine KM, Binnewies TT, Willenbrock H, Ussery DW
    Microbiology (Reading, Engl.) 151:633-7, 2005
    PubMed

2004

    Genome update: correlation of bacterial genomic properties
    Hallin PF, Coenye T, Binnewies TT, Jarmer H, Staerfeldt HH, Ussery DW
    Microbiology (Reading, Engl.) 150:3899-903, 2004
    PubMed
    Genome Update: DNA repeats in bacterial genomes
    Ussery DW, Binnewies TT, Gouveia-Oliveira R, Jarmer H, Hallin PF
    Microbiology (Reading, Engl.) 150:3519-21, 2004
    PubMed
    Genome update: chromosome atlases
    Hallin PF, Binnewies TT, Ussery DW
    Microbiology (Reading, Engl.) 150:3091-3, 2004
    PubMed


Books

    Genome comparison of bacterial pathogens
    Wassenaar TM, Bohlin J, Binnewies TT, Ussery DW
    chapter 1 in Genome Dynamics, volume 6 - Microbial Pathogenomics, (Karger AG publishers, Basel), 2009
    Tools for comparison of bacterial genomes
    Wassenaar TM, Binnewies TT, Hallin PF, Ussery DW
    Microbiology of Hydrocarbons, Oils, Lipids, and Derived Compounds, (Springer-Verlag, Heidelberg, Germany), 2009
    Genome Diversity of Pseudomonas aeruginosa
    Klockgether J, Würdemann D, Wiehlmann L, Binnewies TT, Ussery DW, Tümmler B
    Chapter 2 in Pseudomonas: Genomics and Molecular Biology, (Edited by: Pierre Cornelis, Caister Academic Press, 2008), 2008
    Link to publisher
    Comparative Genomics of Pseudomonas
    Kiil K, Binnewies TT, Willenbrock H, Hansen SK, Yang L, Jelsbak L, Ussery DW, Friis C
    Chapter 1 in Pseudomonas: Model Organism, Pathogen, Cell Factory, (Edited by: B. H. A. Rehm, Wiley-VCH, 2008), 2008
    Link to publisher

2010 (1) 2009 (1) 2008 (5) 2007 (2) 2006 (2) 2005 (8) 2004 and before (3) Books (4)