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2014 (1) 2013 (2) 2012 (3) 2011 (3) 2010 (5) 2008 (2) 2007 and before (3)

2014

    Integrated Text Mining and Chemoinformatics Analysis Associates Diet to Health Benefit at Molecular Level
    Jensen K, Panagiotou G, Kouskoumvekaki I
    PLOS Computational Biology, 2014
    Relevant URL

2013

    Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics.
    Kouskoumvekaki I, Shublaq N, Brunak S
    Brief Bioinform. 2013, 2013
    PubMed
    Discovery of a Novel Selective PPAR Ligand with Partial Agonist Binding Properties by Integrated in Silico in Vitro Work Flow
    Kouskoumvekaki I, Petersen RK, Fratev F, Taboureau O, Nielsen TE, Oprea TI, Sonne S, Flindt E, Jónsdóttir SO, Kristiansen K
    J. Chem. Inf. Model., DOI: 10.1021/ci3006148, 2013
    PubMed

2012

    ChemProt-2.0: visual navigation in a disease chemical biology database
    Kim Kjærulff S, Wich L, Kringelum J, Jacobsen UP, Kouskoumvekaki I, Audouze K, Lund O, Brunak S, Oprea TI, Taboureau O
    Nucleic Acids Res. 2012 Nov 26, 2012
    PubMed
    The chemical interactome space between the human host and the genetically defined gut metabotypes
    Jacobsen UP, Nielsen HB, Hildebrand F, Raes J, Sicheritz-Ponten T, Kouskoumvekaki I, Panagiotou G
    The ISME Journal advance online publication, 22 November 2012; doi:10.1038/ismej.2012.141, 2012
    Relevant URL
    Mapping the Genome of Plasmodium falciparum on the Druglike Chemical Space Reveals Novel Anti-malarial Targets and Potential Drug Leads
    Jensen K, Plichta D, Panagiotou G, Kouskoumvekaki I
    Mol. BioSyst., 2012
    DOI: 10.1039/C2MB00008C

2011

    Associating Drugs, Targets and Clinical Outcomes into an Integrated Network Affords a New Platform for Computer- Aided Drug Repurposing
    Oprea TI, Nielsen SK, Ursu O, Yang JJ, Taboureau O, Mathias SL, Kouskoumvekaki I, Sklar LA, Bologa C
    Molecular Informatics, 2011
    Meta-analysis of heterogeneous data sources for genome-scale identification of risk genes in complex phenotypes
    Pers TH, Hansen NT, Lage K, Koefoed P, Dworzynski P, Miller ML, Flint TJ, Mellerup E, Dam H, Andreassen OA, Djurovic S, Melle I, Børglum AD, Werge T, Purcell S, Ferreira MA, Kouskoumvekaki I, Workman CT, Hansen T, Mors O, Brunak S
    Genet Epidemiol, April 11, 2011
    PubMed
    Back to the Roots: Prediction of Biologically Active Natural Products from Ayurveda Traditional Medicine
    Polur H, Joshi T, Workman CT, Lavekar G, Kouskoumvekaki I
    Molecular Informatics, February 10, 2011

2010

    Pharmacophore-driven identification of PPARã agonists from natural sources
    Petersen RK, Christensen KB, Assimopoulou AN, Fretté X, Papageorgiou VP, Kristiansen K, Kouskoumvekaki I
    J Comput Aided Mol Des., November 11, 2010
    PubMed
    ChemProt: a disease chemical biology database
    Taboureau O, Nielsen SK, Audouze K, Weinhold N, Edsgärd D, Roque FS, Kouskoumvekaki I, Bora A, Curpan R, Jensen TS, Brunak S, Oprea TI
    Nucleic Acids Research, 2010
    PubMed
    The interplay of descriptor-based computational analysis with pharmacophore modeling builds the basis for a novel classification scheme for feruloyl esterases
    Udatha DB, Kouskoumvekaki I, Olsson L, Panagiotou G
    Biotechnology Adv, 2010
    PubMed
    Read abstract
    Navigating the human metabolome for biomarker identification and design of pharmaceutical molecules
    Kouskoumvekaki I, Panagiotou G
    Journal of Biomedicine and Biotechnology, 2010
    Read article
    Chemoinformatics-assisted development of new anti-biofilm compounds
    Dürig A, Kouskoumvekaki I, Vejborg RM, Klemm P
    Appl Microbiol Biotechnol, 2010
    PubMed

2008

    Prediction of pH-dependent solubility of Histone Deacetylase (HDAC)inhibitors
    Kouskoumvekaki I, Hansen NT, Björkling F, Vadlamudi SM, Jónsdóttir SÓ
    SAR and QSAR in Environmental Research, 19, 167-177, 2008, 2008
    PubMed
    Identification of biomarkers for genotyping Aspergilli using non-linear methods for clustering and classification
    Kouskoumvekaki I, Yang Z, Jonsdottir SO, Olsson L, Panagiotou G
    BMC Bioinformatics,28;9(1):59, 2008
    PubMed

2007

    Kemoinformatik: Lær computeren at finde nye lægemidler
    Kouskoumvekaki I, Hansen NT, Jónsdóttir SÓ
    Dansk Kemi, 88(8),23-25, 2007
    Monitoring novel metabolic pathways using metabolomics and machine learning: induction of the phosphoketolase pathway in Aspergillus nidulans cultivations
    Panagiotou G, Kouskoumvekaki I, Jónsdóttir SÓ, Olsson L
    Metabolomics,3,503-516, 2007

2006

    Prediction of pH-Dependent Aqueous Solubility of Druglike Molecules
    Hansen NT, Kouskoumvekaki I, Jørgensen FS, Brunak S, Jónsdóttir SÓ
    Chem. Inf. Model., 46, 2601-9, 2006
    PubMed

2014 (1) 2013 (2) 2012 (3) 2011 (3) 2010 (5) 2008 (2) 2007 and before (3)