Events News Research CBS CBS Publications Bioinformatics
Staff Contact About Internal CBS CBS Other

2015 (1) 2014 (3) 2013 (2) 2012 (3) 2011 (3) 2010 (5) 2008 and before (5)


    Developing a molecular roadmap of drug-food interactions
    Jensen K, Ni Y, Panagiotou G, Kouskoumvekaki I
    PLoS Computational Biology, 2015


    NutriChem: a systems chemical biology resource to explore the medicinal value of plant-based foods
    Jensen K, Panagiotou G, Kouskoumvekaki I
    Nucleic Acids Research, Database issue, 2014
    Nucleic Acids Research
    Exploring Mechanisms of Diet-Colon Cancer Associations through Candidate Molecular Interaction Networks.
    Westergaard D, Li J, Jensen K, Kouskoumvekaki I, Panagiotou G
    BMC Genomics. 2014 May 17;15:380, 2014
    Integrated Text Mining and Chemoinformatics Analysis Associates Diet to Health Benefit at Molecular Level
    Jensen K, Panagiotou G, Kouskoumvekaki I
    PLOS Computational Biology, 2014
    Relevant URL


    Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics.
    Kouskoumvekaki I, Shublaq N, Brunak S
    Briefings in Bioinformatics, 2013
    Discovery of a Novel Selective PPAR Ligand with Partial Agonist Binding Properties by Integrated in Silico in Vitro Work Flow
    Kouskoumvekaki I, Petersen RK, Fratev F, Taboureau O, Nielsen TE, Oprea TI, Sonne S, Flindt E, Jónsdóttir SO, Kristiansen K
    Journal of Chemical Information and Modeling 53(4):923-37 doi:10.1021/ci3006148, 2013


    ChemProt-2.0: visual navigation in a disease chemical biology database
    Kim Kjærulff S, Wich L, Kringelum J, Jacobsen UP, Kouskoumvekaki I, Audouze K, Lund O, Brunak S, Oprea TI, Taboureau O
    Nucleic Acids Research. 41:D464-9 doi:10.1093/nar/gks1166, 2012
    The chemical interactome space between the human host and the genetically defined gut metabotypes
    Jacobsen UP, Nielsen HB, Hildebrand F, Raes J, Sicheritz-Ponten T, Kouskoumvekaki I, Panagiotou G
    The ISME Journal advance online publication, 22 November 2012; doi:10.1038/ismej.2012.141, 2012
    Relevant URL
    Mapping the Genome of Plasmodium falciparum on the Druglike Chemical Space Reveals Novel Anti-malarial Targets and Potential Drug Leads
    Jensen K, Plichta D, Panagiotou G, Kouskoumvekaki I
    Mol. BioSyst., 2012
    DOI: 10.1039/C2MB00008C


    Associating Drugs, Targets and Clinical Outcomes into an Integrated Network Affords a New Platform for Computer- Aided Drug Repurposing
    Oprea TI, Nielsen SK, Ursu O, Yang JJ, Taboureau O, Mathias SL, Kouskoumvekaki I, Sklar LA, Bologa C
    Molecular Informatics, 2011
    Meta-analysis of heterogeneous data sources for genome-scale identification of risk genes in complex phenotypes
    Pers TH, Hansen NT, Lage K, Koefoed P, Dworzynski P, Miller ML, Flint TJ, Mellerup E, Dam H, Andreassen OA, Djurovic S, Melle I, Børglum AD, Werge T, Purcell S, Ferreira MA, Kouskoumvekaki I, Workman CT, Hansen T, Mors O, Brunak S
    Genet. Epidemiol. 35(5):318-32 doi:10.1002/gepi.20580, 2011
    Back to the Roots: Prediction of Biologically Active Natural Products from Ayurveda Traditional Medicine
    Polur H, Joshi T, Workman CT, Lavekar G, Kouskoumvekaki I
    Molecular Informatics, February 10, 2011


    Pharmacophore-driven identification of PPARã agonists from natural sources
    Petersen RK, Christensen KB, Assimopoulou AN, Fretté X, Papageorgiou VP, Kristiansen K, Kouskoumvekaki I
    J. Comput. Aided Mol. Des. 25(2):107-16 doi:10.1007/s10822-010-9398-5, 2010
    ChemProt: a disease chemical biology database
    Taboureau O, Nielsen SK, Audouze K, Weinhold N, Edsgärd D, Roque FS, Kouskoumvekaki I, Bora A, Curpan R, Jensen TS, Brunak S, Oprea TI
    Nucleic Acids Research. 39:D367-72 doi:10.1093/nar/gkq906, 2010
    The interplay of descriptor-based computational analysis with pharmacophore modeling builds the basis for a novel classification scheme for feruloyl esterases
    Udatha DB, Kouskoumvekaki I, Olsson L, Panagiotou G
    Biotechnol. Adv. 29(1):94-110 doi:10.1016/j.biotechadv.2010.09.003, 2010
    Read abstract
    Navigating the human metabolome for biomarker identification and design of pharmaceutical molecules
    Kouskoumvekaki I, Panagiotou G
    Journal of Biomedicine and Biotechnology, 2010
    Read article
    Chemoinformatics-assisted development of new anti-biofilm compounds
    Dürig A, Kouskoumvekaki I, Vejborg RM, Klemm P
    Appl. Microbiol. Biotechnol. 87(1):309-17 doi:10.1007/s00253-010-2471-0, 2010


    Prediction of pH-dependent solubility of Histone Deacetylase (HDAC)inhibitors
    Kouskoumvekaki I, Hansen NT, Björkling F, Vadlamudi SM, Jónsdóttir SÓ
    SAR QSAR Environ Res 19:167-77 doi:10.1080/10629360701843367, 2008
    Identification of biomarkers for genotyping Aspergilli using non-linear methods for clustering and classification
    Kouskoumvekaki I, Yang Z, Jonsdottir SO, Olsson L, Panagiotou G
    BMC Bioinformatics 9:59 doi:10.1186/1471-2105-9-59, 2008


    Kemoinformatik: Lær computeren at finde nye lægemidler
    Kouskoumvekaki I, Hansen NT, Jónsdóttir SÓ
    Dansk Kemi, 88(8),23-25, 2007
    Monitoring novel metabolic pathways using metabolomics and machine learning: induction of the phosphoketolase pathway in Aspergillus nidulans cultivations
    Panagiotou G, Kouskoumvekaki I, Jónsdóttir SÓ, Olsson L
    Metabolomics,3,503-516, 2007


    Prediction of pH-Dependent Aqueous Solubility of Druglike Molecules
    Hansen NT, Kouskoumvekaki I, Jørgensen FS, Brunak S, Jónsdóttir SÓ
    J Chem Inf Model 46(6):2601-9, 2006

2015 (1) 2014 (3) 2013 (2) 2012 (3) 2011 (3) 2010 (5) 2008 and before (5)