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2013 (8) 2012 (4) 2011 (2) 2010 (2) 2009 (3)

2013

    Complete genes may pass from food to human blood
    Spisák S, Solymosi N, Ittzés P, Bodor A, Kondor D, Vattay G, Barták BK, Sipos F, Galamb O, Tulassay Z, Szallasi Z, Rasmussen S, Sicheritz-Ponten T, Brunak S, Molnar B, Csabai I
    PLoS ONE [1932-6203], 2013
    PubMed
    Bacterial natural transformation by highly fragmented and damaged DNA
    Overballe-Petersen S, Harms K, Orlando LA, Mayar JV, Rasmussen S, Dahl TW, Rosing MT, Poole AM, Sicheritz-Ponten T, Brunak S, Inselmann S, de Vries J, Wackernagel W, Pybus OG, Nielsen R, Johnsen PJ, Nielsen KM, Willerslev E
    Proc Natl Acad Sci U S A. 2013 Nov 18, 2013
    PubMed
    Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans
    Raghavan M, Skoglund P, Graf KE, Metspalu M, Albrechtsen A, Moltke I, Rasmussen S, Stafford Jr TW, Orlando L, Metspalu E, Karmin M, Tambets K, Rootsi S, Magi R, Campos PF, Balanovska E, Balanovsky O, Khusnutdinova E, Litvinov S, Osipova LP, Fedorova SA, Voevoda MI, DeGiorgio M, Sicheritz-Ponten T, Brunak S, Demeshchenko S, Kivisild T, Villems R, Nielsen R, Jakobsson M, Willerslev E
    Nature, 2013/11/20/online, 10.1038/nature12736, 2013
    Nature
    Metagenomic species profiling using universal phylogenetic marker genes.
    Sunagawa S, Mende DR, Zeller G, Izquierdo-Carrasco F, Berger SA, Kultima JR, Coelho LP, Arumugam M, Tap J, Nielsen HB, Rasmussen S, Brunak S, Pedersen O, Guarner F, de Vos WM, Wang J, Li J, Doré J, Ehrlich SD, Stamatakis A, Bork P
    Nat Methods., 2013
    PubMed
    Genome-scale cold stress response regulatory networks in ten Arabidopsis thaliana ecotypes.
    Barah P, Jayavelu ND, Rasmussen S, Nielsen HB, Mundy J, Bones AM
    BMC Genomics. 2013, 2013
    PubMed
    Richness of human gut microbiome correlates with metabolic markers.
    Le Chatelier E, Nielsen T, Qin J, Prifti E, Hildebrand F, Falony G, Almeida M, Arumugam M, Batto JM, Kennedy S, Leonard P, Li J, Burgdorf K, Grarup N, Jørgensen T, Brandslund I, Nielsen HB, Juncker AS, Bertalan M, Levenez F, Pons N, Rasmussen S, Sunagawa S, Tap J, Tims S, Zoetendal EG, Brunak S, Clément K, Doré J, Kleerebezem M, Kristiansen K, Renault P, Sicheritz-Ponten T, de Vos WM, Zucker JD, Raes J, Hansen T; MetaHIT consortium, Bork P, Wang J, Ehrlich SD, Pedersen O, Guedon E, Delorme C, Layec S, Khaci G, van de Guchte M, Vandemeulebrouck G, Jamet A, Dervyn R, Sanchez N, Maguin E, Haimet F, Winogradski Y, Cultrone A, Leclerc M, Juste C, Blottière H, Pelletier E, LePaslier D, Artiguenave F, Bruls T, Weissenbach J, Turner K, Parkhill J, Antolin M, Manichanh C, Casellas F, Boruel N, Varela E, Torrejon A, Guarner F, Denariaz G, Derrien M, van Hylckama Vlieg JE, Veiga P, Oozeer R, Knol J, Rescigno M, Brechot C, M\\\'Rini C, Mérieux A, Yamada T
    Nature. 2013, 2013
    PubMed
    Transcriptome responses to combinations of stresses in Arabidopsis.
    Rasmussen S, Barah P, Suarez-Rodriguez MC, Bressendorff S, Friis P, Costantino P, Bones AM, Nielsen HB, Mundy J
    Plant Physiol. 2013 Apr;161(4):1783-94. doi: 10.1104/pp.112.210773. Epub 2013 Feb 27., 2013
    PubMed
    Targeted metabolic engineering guided by computational analysis of single-nucleotide polymorphisms (SNPs).
    Udatha DB, Rasmussen S, Sicheritz-Pontén T, Panagiotou G
    Methods Mol Biol. 2013;985:409-28. doi: 10.1007/978-1-62703-299-5_20., 2013
    PubMed

2012

    Identification of acquired antimicrobial resistance genes
    Zankari E, Hasman H, Cosentino S, Vestergaard M, Rasmussen S, Lund O, Aarestrup FM, Larsen MV
    Journal of Antimicrobial Chemotherapy, 2012
    PubMed
    snpTree-a web-server to identify and construct SNP trees from whole genome sequence data
    Leekitcharoenphon P, Kaas RS, Thomsen MCF, Friis C, Rasmussen S, Aarestrup FM
    BMC Genomics 13 (Suppl 7), S6, 2012
    PubMed
    Multilocus Sequence Typing of Total Genome Sequenced Bacteria
    Larsen MV, Cosentino S, Rasmussen S, Friis C, Hasman H et al
    J. Clin. Micobiol. 2012. 50(4): 1355-1361., 2012
    Global Network Reorganization During Dynamic Adaptations of Bacillus subtilis Metabolism
    Buescher JM, Liebermeister W, Jules M, Uhr M, Muntel J, Botella E, Hessling B, Kleijn RJ, Chat LL, Lecointe F, Mäder U, Nicolas P, Piersma S, Rügheimer F, Becher D, Bessieres P, Bidnenko E, Denham EL, Dervyn E, Devine KM, Doherty G, Drulhe S, Felicori L, Fogg MJ, Goelzer A, Hansen A, Harwood CR, Hecker M, Hubner S, Hultschig C, Jarmer H, Klipp E, Leduc A, Lewis P, Molina F, Noirot P, Peres S, Pigeonneau N, Pohl S, Rasmussen S, Rinn D, Schaffer M, Schnidder J, Schwikowski B, Van Dijl JM, Veiga P, Walsh S, Wilkinson AJ, Stelling J, Aymerich S, Sauer U
    Science, 2 March, 2012

2011

    An Aboriginal Australian Genome Reveals Separate Human Dispersals into Asia
    Rasmussen M, Guo X, Wang Y, Lohmueller KE, Rasmussen S, Albrechtsen A, Skotte L, Lindgren S, Metspalu M, Jombart T, Kivisild T, Zhai W, Eriksson A, Manica A, Orlando L, De La Vega F, Tridico S, Metspalu E, Nielsen K, Ávila-Arcos MA, Moreno-Mayar JV, Muller C, Dortch J, Gilbert MTP, Lund O, Wesolowska A, Karmin M, Weinert LA, Wang B, Li J, Tai S, Xiao F, Hanihara T, van Driem G, Jha AR, Ricaut FX, de Knijf P, Migliano AB, Gallego-Romero I, Kristiansen K, Lambert DM, Brunak S, Forster P, Brinkmann B, Nehlich O, Bunce M, Richards M, Gupta R, Bustamante CD, Krogh A, Foley RA, Lahr MM, Balloux F, Sichertitz-Pontén T, Villems R, Nielsen R, Jun W, Willerslev E
    Science, 2011
    PubMed
    Microbial community structure of Arctic multiyear sea ice and surface seawater by 454 sequencing of the 16S RNA gene
    Bowman JS, Rasmussen S, Blom N, Deming JW, Rysgaard S, Sicheritz-Ponten T
    ISME J, Jun 30, 2011
    PubMed

2010

    Lactobacillus acidophilus induces virus immune defence genes in murine dendritic cells by a Toll-like receptor-2-dependent mechanism
    Weiss G, Rasmussen S, Zeuthen LH, Nielsen BN, Jarmer H, Jespersen L, Frøkiær H
    Immunology, 2010
    PubMed
    Bifidobacterium bifidum Actively Changes the Gene Expression Profile Induced by Lactobacillus acidophilus in Murine Dendritic Cells
    Weiss G, Rasmussen S, Nielsen Fink L, Jarmer H, Nøhr Nielsen B, Frøkiær H
    PLoS One, 2010
    PubMed

2009

    Impaired uptake and/or utilisation of leucine is suppressed by the SPT15-300 allele of the TATA binding protein gene.
    Baerends RJ, Qiu JL, Rasmussen S, Nielsen HB, Brandt A
    Appl Environ Microbiol, 2009
    PubMed
    Transcriptional landscape estimation from tiling array data using a model of signal shift and drift.
    Nicolas P, Leduc A, Robin S, Rasmussen S, Jarmer H, Bessières P
    Bioinformatics 25: 2341-7, 2009
    PubMed
    The transcriptionally active regions in the genome of Bacillus subtilis
    Rasmussen S, Nielsen HB, Jarmer H
    Mol Micro 73: 1043-57, 2009
    PubMed

2013 (8) 2012 (4) 2011 (2) 2010 (2) 2009 (3)