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2015 (1) 2014 (4) 2013 (2) 2012 (2) 2011 (1)


    Pan-cancer analysis of genomic scar signatures associated with homologous recombination deficiency suggests novel indications for existing cancer drugs
    Marquard AM, Eklund AC, Joshi T, Krzystanek M, Favero F, Wang ZC, Richardson AL, Silver DP, Szallasi Z, Birkbak NJ
    Biomarker Research, 2015
    Biomarker Research


    Sequenza: allele-specific copy number and mutation profiles from tumor sequencing data
    Favero F, Joshi T, Marquard AM, Birkbak NJ, Krzystanek M, Li Q, Szallasi Z, Eklund AC
    Annals of Oncology, 2014
    Annals of Oncology
    RNA-protein interactions: an overview
    Re A, Joshi T, Kulberkyte E, Morris Q, Workman CT
    Methods in Molecular Biology 2014;1097:491-521., 2014
    Systematic Evaluation of the Prognostic Impact and Intratumour Heterogeneity of Clear Cell Renal Cell Carcinoma Biomarkers.
    Gulati S, Martinez P, Joshi T, Birkbak NJ, Santos CR, Rowan AJ, Pickering L, Gore M, Larkin J, Szallasi Z, Bates PA, Swanton C, Gerlinger M
    European Urology. 2014 Jul 18. pii: S0302-2838(14)00627-7., 2014
    Tolerance of Whole-Genome Doubling Propagates Chromosomal Instability and Accelerates Cancer Genome Evolution
    Dewhurst SM, McGranahan N, Burrell RA, Rowan AJ, Grönroos E, Endesfelder D, Joshi T, Mouradov D, Gibbs P, Ward RL, Hawkins NJ, Szallasi Z, Sieber OM, Swanton C
    Cancer Discovery. 2014 Feb;4(2):175-85., 2014


    MicroRNA profiling in ocular adnexal lymphoma: A role for MYC and NFKB1 mediated dysregulation of microRNA expression in aggressive disease.
    Hother C, Rasmussen P, Joshi T, Reker D, Ralfkiaer U, Workman C, Heegaard S, Ralfkiaer E, Grønbæk K
    Investigative Ophthalmology & Visual Science. 54(8):5169-75 doi:10.1167/iovs.13-12272, 2013
    Parallel evolution of tumor subclones mimics diversity between tumors.
    Martinez P, Birkbak NJ, Gerlinger M, McGranahan N, Burrell R, Rowan A, Joshi T, Fisher R, Larkin J, Szallasi Z, Swanton C
    The Journal of Pathology. 230(4):356-64 doi:10.1002/path.4214, 2013
    Relevant URL


    LocARNA-P: Accurate boundary prediction and improved detection of structural RNAs
    Will S, Joshi T, Hofacker IL, Stadler PF, Backofen R
    RNA, 2012
    Relevant URL
    Genome-wide analysis of cytogenetic aberrations in ETV6/RUNX1-positive childhood acute lymphoblastic leukaemia
    Borst L, Wesolowska A, Joshi T, Borup R, Nielsen FC, Andersen MK, Jonsson OG, Wehner PS, Wesenberg F, Frost B-M, Gupta R, Schmiegelow K
    British Journal of Haematology 2012 Mar;, 2012


    Back to the Roots: Prediction of Biologically Active Natural Products from Ayurveda Traditional Medicine
    Polur H, Joshi T, Workman CT, Lavekar G, Kouskoumvekaki I
    Molecular Informatics, February 10, 2011

2015 (1) 2014 (4) 2013 (2) 2012 (2) 2011 (1)