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2016 (5) 2015 (3) 2013 (3) 2012 (1)

2016

    KinMutRF: a random forest classifier of sequence variants in the human protein kinase superfamily
    Pons T, Vazquez M, Matey-Hernandez ML, Brunak S, Valencia A, Izarzugaza JMG
    BMC Genomics, 2016
    Relevant URL
    How compelling are the data for Epstein-Barr virus being a trigger for systemic lupus and other autoimmune diseases?
    Draborg A, Izarzugaza JM, Houen G
    Current Opinion in Rheumatology, doi: 10.1097/BOR.0000000000000289, 2016
    PubMed
    Identification of Known and Novel Recurrent Viral Sequences in Data from Multiple Patients and Multiple Cancers
    Friis-Nielsen J, Kjartansdóttir KR, Mollerup S, Asplund M, Mourier T, Jensen RH, Hansen TA, Rey-Iglesia A, Richter SR, Nielsen IB, Alquezar-Planas DE, Olsen PV, Vinner L, Fridholm H, Nielsen LP, Willerslev E, Sicheritz-Pontén T, Lund O, Hansen AJ, Izarzugaza JM, Brunak S
    Viruses. 2016 Feb 19;8(2)., 2016
    PubMed
    MDPI
    Propionibacterium acnes - disease causing agent or common contaminant? Detection in diverse patient samples by next generation sequencing
    Mollerup S, Friis-Nielsen J, Vinner L, Hansen TA, Richter SR, Fridholm H, Herrera JA, Lund O, Brunak S, Izarzugaza JM, Mourier T, Nielsen LP, Hansen AJ
    J Clin Microbiol. 2016 Jan 27. pii: JCM.02723-15, 2016
    PubMed
    JCM
    wKinMut-2: Identification and Interpretation of Pathogenic Variants in Human Protein Kinases
    Vazquez M, Pons T, Brunak S, Valencia A, Izarzugaza JM
    Human Mutation, 2016
    PubMed
    Relevant URL

2015

    Investigation of Human Cancers for Retrovirus by Low-Stringency Target Enrichment and High-Throughput Sequencing
    Vinner L, Mourier T, Friis-Nielsen J, Gniadecki R, Dybkaer K, Rosenberg J, Langhoff JL, Santa Cruz DF, Fonager J, Izarzugaza JM, Gupta R, Sicheritz-Ponten T, Brunak S, Willerslev E, Nielsen LP, Hansen AJ
    Nature Scientific Reports 5, 2015
    PubMed
    Nature
    Traces of ATCV-1 associated with laboratory component contamination
    Kjartansdóttir KR, Friis-Nielsen J, Asplund M, Mollerup S, Mourier T, Jensen RH, Hansen TA, Rey-Iglesia A, Richter SR, Alquezar-Planas DE, Olsen PV, Vinner L, Fridholm H, Sicheritz-Pontén T, Nielsen LP, Brunak S, Willerslev E, Izarzugaza JM, Hansen AJ
    Proceedings of the National Academy of Sciences, 2015
    PubMed
    Novel variation and de novo mutation rates in population-wide de novo assembled Danish trios
    Besenbacher S, Liu S, Izarzugaza JM, Grove J, Belling KC, Bork-Jensen J, Huang S, Als TD, Li S, Yadav R, Rubio-García A, Lescai F, Demontis D, Rao J, Ye W, Mailund T, Friborg RM, Pedersen CN, Xu R, Sun J, Liu H, Wang O, Cheng X, Flores D, Rydza E, Rapacki K, Damm Sørensen J, Chmura P, Westergaard D, Dworzynski P, Sørensen TI, Lund O, Hansen T, Xu X, Li N, Bolund L, Pedersen O, Eiberg H, Krogh A, Børglum AD, Brunak S, Kristiansen K, Schierup MH, Wang J, Gupta R, Villesen P, Rasmussen S
    Nature Communications, 2015
    PubMed
    Relevant URL

2013

    wKinMut: An integrated tool for the analysis and interpretation of mutations in human protein kinases
    Izarzugaza JMG, Vazquez M, Pozo A, Valencia A
    BMC Bioinformatics 2013, 14:345, 2013
    BMC Bioinformatics - biomedcentral
    Tumor Mutation Burden Forecasts Outcome in Ovarian Cancer with BRCA1 or BRCA2 Mutations
    Birkbak NJ, Kochupurakkal B, Izarzugaza JMG, Eklund AC, Li Y, Liu J, Szallasi Z, Matulonis UA, Richardson AL, Iglehart JD, Wang ZC
    Research Article | published 12 Nov 2013 | PLOS ONE 10.1371/journal.pone.0080023, 2013
    PLOS ONE
    Prediction of Disease Causing Non-Synonymous SNPs by the Artificial Neural Network Predictor NetDiseaseSNP
    Johansen MB, Izarzugaza JM, Brunak S, Petersen TN, Gupta R
    PLoS ONE 8(7):e68370 doi:10.1371/journal.pone.0068370, 2013
    PubMed

2012

    Interpretation of the consequences of mutations in protein kinases: combined use of bioinformatics and text mining
    Izarzugaza JM, Krallinger M, Valencia A
    Front. Physio. 3:323. doi: 10.3389/fphys.2012.00323, 2012
    Relevant URL

2016 (5) 2015 (3) 2013 (3) 2012 (1)