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Full Project Catalog


Bachelor Projects

Behavioral Phenomics
  • 11/07-2014 - In vivo effects of different emulsifiers and dietary oils on establishment of the gut microbiota in germ-free mice
  • 01/07-2013 - Does birth order affect personality?
Computational Chemical Biology
  • 07/06-2013 - Exploring tools for the prediction of polypharmacology
  • 30/06-2012 - Deciphering the complex effects of diet on human health by integrating large scale transcriptome data
  • 08/07-2009 - A Drug - Protein Interaction Network Related to Psychotic Diseases
Protein and Immune Systems Biology
  • 07/06-2013 - Exploring tools for the prediction of polypharmacology
  • 21/01-2013 - Benchmarking of a method for species identification from whole genome sequencing data
  • 14/07-2012 - Antibody related functional studies of Influenza Hemagglutinin protein
  • 01/12-2011 - A novel method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid enrichment and depletion
  • 30/06-2011 - Prediction of the immunogenicity of therapeutic antibodies
  • 30/06-2011 - Validation of predictors of discontinous B-cell epitopes using homology modelled 3-D protein structures
  • 15/06-2011 - Validtion of multi-layer multi-valued neural networks
  • 10/12-2010 - Immunological pressure and molecular evolution of Influenza A virus
  • 20/12-2009 - Molecular Evolution of Influenza A Virus
  • 26/06-2009 - Selection and Validation of CTL Responding Peptides by Bioinformatics Methods
  • 07/05-2009 - Structural Properties of MHC Class II Ligands
  • 23/01-2009 - Molecular Evolution of Influenza A Virus
  • 19/12-2008 - Implementation and validation of a stabilization matrix method for peptide:MHC binding predictions
  • 30/06-2008 - Peptide binding based substitution matrices in epitope prediction
Systems Biology of Immune Regulation
  • 11/07-2014 - In vivo effects of different emulsifiers and dietary oils on establishment of the gut microbiota in germ-free mice
  • 27/06-2014 - Effect of feeding and fasting on FGF21 and other metabolic systems in lean and obese mice
  • 21/02-2014 - Expression and immunological characterization of a selected panel of Chlamydia trachomatis persistence proteins
  • 31/01-2014 - Identification of immunoactive endotoxins in household dust from a Danish birth cohort
  • 27/01-2014 - The impact of maternal diet during pregnancy and pactation on programming of the liver lipidome in adult sheep
  • 28/08-2013 - Bile acids and their influence on the GPR5
  • 28/06-2013 - Bile acid signaling and its impact on appetite regulation
  • 28/06-2013 - Molecular regulation of IL-12p70 in dendritic cells
  • 28/06-2013 - Alterations in the liver lipidome induced by type-2 diabetes in the GK-rat
  • 28/06-2013 - Effects of maternal diet during gestation and lactation on the cardiac lipidome in the adult offspring
  • 26/06-2013 - Establishing culture of Inferior olivary nucleus
  • 14/06-2013 - The impact of dietary factors and BMI on the content of medium-chained fatty acids in human milk
  • 20/07-2012 - Effects of a 4-weeks high fat challenge on the gut microbiota composition in the adult offspring from dams fed high energy or normal diets during gestation and lactation
  • 13/07-2012 - Analysis of IL-1beta and TNF-alpha in adipose tissue extracts
  • 29/06-2012 - Effects of maternal perinatal diets on the gut microbiota composition in the adult offspring
  • 21/06-2012 - Effects of high sucrose/high fat diets on plasma lipid composition in obeseity prone rat
  • 21/02-2012 - Expression of immunoregulatory proteins in tumor cells and antigen-presenting cells
  • 21/01-2012 - Will maternal overnutrition during gestation and weaning affect development of adipose inflammation in the offspring?
  • 20/01-2012 - Quantification of C. trachomatis load by q-pcr and immunoflourescence staining – is there a correlation
  • 20/01-2012 - Functional examinations of MLH1, MSH2, and MSH6 mutations identified in Danish Hereditary Non-polyposis Colorectal Cancer patients
  • 19/01-2012 - Perinatal programming of the transcritpion of genes in hepatic lipid metabolism
  • 01/07-2011 - Development of a method for characterization and activation of human invariant NKT cells
  • 31/01-2011 - Deregulated immune responses in atopic dermatitis
  • 31/01-2011 - Identification of DC phenotype induced by Salmonella
  • 22/01-2011 - Mouse model of endometriosis
  • 21/01-2011 - Effects of maternal gestational-overnutrition on regulation of lipid-metabolism in the offspring
  • 20/08-2010 - Tumor Suppressive Factors and Modulation of Dendritic Cells in Melanoma Cancer
  • 31/05-2010 - Expression of Markers for M1 and M2-type Macrophages in Adipose Tissue from Obese Mice ? The Impact of Phytanic Acid
  • 26/02-2010 - Development and Validation of a Tracer for PET-based Non-invasive uPAR Characterization in Tumors
  • 04/06-2009 - Immune Regulation in Human Dendritic Cells by Fungal b-Glucans
  • 28/02-2009 - Developmental Programming of Hepatic Lipid Deposition
  • 16/05-2008 - Immune response regulation by specific nutrients
  • 25/02-2008 - Engelsk titel* Effects of the dietary fatty acid intake on PPAR-? activity in the liver
  • 31/01-2008 - Foetal programming; Effects on pancreatic lipid deposition
  • 29/06-2007 - Immuno modulating effects of fibres from barley and oat
  • 22/06-2007 - The impact of obesity on the activity of serine-palmitoyl-CoA transferase in mouse heart.
  • 22/06-2007 - The impact of obesity on sphingolipids in the circulation
Integrative Systems Biology
  • 15/07-2012 - Large-scale text-mining of PubMed abstracts to identify trait causing genes
  • 08/07-2009 - A Drug - Protein Interaction Network Related to Psychotic Diseases
  • 30/06-2008 - Expression Evidence for Loss of Function Mutations in Key Cancer Genes of Diffuse Large B-Cell Lymphoma (DLBL) Patients
Molecular Evolution
  • 20/12-2011 - Evolution of new genes in malaria and related parasites
  • 17/06-2011 - Analysis of variable gene families in the genome of the malaria parasite
  • 10/12-2010 - Immunological pressure and molecular evolution of Influenza A virus
  • 30/09-2010 - Evolution and Dynamics of the Major Vault Protein
  • 01/07-2010 - Detection of Natural Selection in the Malaria Parasite Plasmodium Falciparum Using Model-based Methods
  • 07/05-2010 - Intron Evolution
  • 20/12-2009 - Molecular Evolution of Influenza A Virus
  • 18/12-2009 - Intron Evolution
  • 23/01-2009 - Molecular Evolution of Influenza A Virus
Metagenomics
  • 06/07-2012 - Analysis of functional protein variations across several completed yeast genomes
Regulatory Genomics
  • 11/08-2013 - Modeling the unfolded protein response: a computational biology approach to enable in silico metabolic engineering
  • 15/02-2013 - A Systems Biology analysis of Quantitative Proteomics from L. reuteri
  • 27/06-2011 - MicroRNA regulation of gene expression in lymphomas
  • 01/09-2010 - BSc Thesis & iGEM Competition
  • 15/06-2010 - Modeling the Regulation of Metabolism: Challenges and Perspectives
  • 30/06-2008 - Expression Evidence for Loss of Function Mutations in Key Cancer Genes of Diffuse Large B-Cell Lymphoma (DLBL) Patients
Cancer Systems Biology
  • 01/06-2014 - Evaluation of automatic data analysis of flow cytometry data



Master Projects

Behavioral Phenomics
  • 18/07-2014 - Molecular Pharmacology of the Calcitonin receptor
  • 07/08-2013 - Inferring phylogenetics: Using probabilistic-based evolution to analyze biological systems in all domains of life
  • 24/06-2013 - Analysis of human face images with computational methods in the context of finding associations to personality traits
  • 17/10-2012 - Can you judge a book by its cover? - An investigation into the proposed connection between looks and personality
Computational Chemical Biology
  • 20/09-2013 - Development of virtual screening tools and evaluation of chemical fingerprints f?or lead and scaffold hopping
  • 10/01-2013 - Evaluation of Apicomplexan AP2 domains in relation to ligand specificity
  • 16/03-2012 - A human diet interactome network of protein complexes implicated in genetic disorders
  • 09/03-2012 - Carbohydrate active enzymes: looking for new sources and novel functionalities
  • 28/02-2012 - QSAR and docking studies on selective PPAR? ligand analogues
  • 15/09-2011 - Deciphering the clinical effect of drugs via metagenome and metabolome analyses
  • 10/06-2011 - Novel Apiaceae cytochromes P450 of the CYP71AJ subfamily: Combining functional yeast expression and in silico homology modeling in elucidating substrate specificity
  • 30/01-2011 - Computatioinal Design at Small Molecules for Targeting Human Infectious Desease
  • 30/08-2010 - In Silico Exploration of the Chemical Space of Natural Compounds from Ayurveda Traditional Medicine
  • 12/06-2009 - Analysis of the Pharmacological Space Based on PubChem Bioassay Data
  • 02/01-2009 - Global Analyses of the Chemical Space of Ligands Binding to PPARs and Other Nuclear Receptors
  • 05/10-2007 - Development of a Chemoinformatics database and tool for the Prediction of Compounds that could act as Leads in the Drug Development Pipeline
Functional Human Variation
  • 01/02-2012 - Protein complexes affected by differential expression and copy number variations in CLL patient subsets
  • 14/10-2011 - Integrative data analysis of chronic lymphocytic leukemia patient subsets
  • 22/08-2011 - Improved protein homology modelling using structure specific gap penalties and multiple templates
  • 20/11-2009 - Neural Network Based Computational Prediction of MicroRNA Targets
  • 03/03-2009 - Structure-guided Prediction of MHC-II Ligand Binding
  • 06/08-2007 - Prediction of local structure elements using artificial neural networks
Protein and Immune Systems Biology
  • 01/06-2014 - Construction and Benchmarking of Methods for Whole Genome based Phylogeny
  • 22/03-2014 - Bayesian modelling of MHC peptide binding
  • 23/02-2014 - Improvement of the pan MHC class I prediction method, PickPocket, through SMM optimisation and development of an alternative picking algorithm
  • 01/03-2013 - AnnDecode, a method for artificial neural network decoding
  • 14/01-2013 - Imprints on the T cell epitope repertoire from self-nonself proteomic overlaps
  • 21/12-2012 - Predicting stability of peptide:MHC complexes; impacts for epitope discovery
  • 10/07-2012 - Development of an automated approach to FACS data analysis
  • 31/05-2012 - Analysis of overlap between pathogenic and human peptides in MHC binding and presentation
  • 07/11-2011 - Peptide overlap between humans and human pathogens
  • 19/09-2011 - Identification of position specific receptor-ligant interactions by use of artificial neural network decomposition. An investigation of interactions in the MHC:peptide system
  • 22/08-2011 - Improved protein homology modelling using structure specific gap penalties and multiple templates
  • 15/04-2011 - Evaluation of HIV-1 CCR5/CXCR4 Tropism in Danish HIV Infected Patients
  • 31/03-2011 - Analysis of B-cell epitopes based on structural analysis of 3D antigen-antibody interactions
  • 25/03-2011 - Define Optimal Conditions for Assaying of Low-affinity TCR-MHC Interactions Using MHC Multimers
  • 15/03-2011 - Analysis of Individual and Mixtures of Antibodies
  • 14/02-2011 - In Silico Immunogenicity Evaluation and Commercialisation of a Protein Drug
  • 30/06-2010 - In Silico Prediction of T Cell Receptor Specificity
  • 01/03-2010 - Analysis of Malaria Proteins
  • 31/07-2009 - Swine SLA Clustering Using Sequence and Specificity Similariity
  • 30/06-2009 - In Silico Prediction of Bacterial Pathogenicity
  • 03/03-2009 - Structure-guided Prediction of MHC-II Ligand Binding
  • 20/08-2007 - Computational Mapping of Antibody Binding Sites in HIV
  • 06/08-2007 - Prediction of local structure elements using artificial neural networks
  • 06/07-2007 - Feature based discrimination of antigenes in Malaria
  • 31/07-2006 - Implementation and Evaluation of Protein Potentials: Applications to Immunological Problems
  • 28/07-2006 - Epitope prediction in arenaviruses
  • 01/04-2005 - Development of diagnostic assays for detection of retinal diseases
Systems Biology of Immune Regulation
  • 29/08-2014 - Relation between changes in brain membrane lipid polyunsaturated fatty acid composition and leptin signalling in sheep born by dams exposed to dietary restriction during the third trimester of gestation
  • 20/06-2014 - Development of a model for osteoclasts in osteoarthritis
  • 20/06-2014 - Investigation of STAT3s role in IFN?-induced PD-L1 expression
  • 03/06-2014 - Characterization of the effect of sCT on fat accumulation in vitro and in vivo
  • 30/03-2014 - Defining the type of tissue-located inflammation during obesity development
  • 24/03-2014 - Effect of combining EGFR/HER2/HER3 therapeutic antibodies on receptor dimerization in cancer cells
  • 17/03-2014 - Characterization of inflammation in the hypothalamus during obesity development
  • 01/03-2014 - Comprehensive temporal profiling of obesity-induced inflammation in skeletal muscle
  • 26/08-2013 - Differentiation of neurovascular endothelial cells from human induced pluripotent stem cells through intertemporal stimulation with cytokines and small molecule analogues
  • 09/08-2013 - Isolation and characterization of immunomodulatory components from specific gut bacteria
  • 14/06-2013 - Expression and immunological characterization of a panel of Streptococcus pyogenes antigens
  • 17/05-2013 - Dendritic cell lipidomics
  • 15/05-2013 - Development of a Novel Protein-Based Drug Delivery System to Inhibit Cancer Growth
  • 15/03-2013 - Characterization of citrulline antibodies in rheumatoid arthritis
  • 21/12-2012 - In vitro regulatory potential of lymphocytes from mice treated with sublingual immunotherapy.
  • 10/12-2012 - Cell-specific phosphorylation networks as predictors of cancer drug resistance
  • 15/10-2012 - Characterization of citrulline antibodies in rheumatoid arthritis
  • 06/10-2012 - Immunological characterization of Chlamydia trachomatis vaccine antigens
  • 01/10-2012 - The degradation fragments of Tau protein as biomarkers of Alzheimer’s Disease
  • 03/09-2012 - Genetic Markers for Obesity
  • 30/07-2012 - Gut microbial dysbiosis, inflammation and immunoregulatory factors
  • 01/11-2011 - HIV tropisms and deregulated response patterns in dendritic cells
  • 18/04-2011 - Secreted MTB Virulence Proteins as Vaccine Antigens and Identification of Possible Host Cell Targets
  • 14/03-2011 - Bacteria-induced modulation of lung epithelium expression patterns and crosstalk with local immune cells
  • 14/03-2011 - Comparison of the reactivity of airway-associated bacteria in relation to lung inflammation
  • 13/03-2011 - Dendritic Cell Responses to Commensal Bacteria of the Lungs
  • 14/01-2011 - Characterisation of Binding Capacity of Plasmodium Falciparum Infected Erythrocytes during Flow
  • 27/11-2010 - Anaysis of difffentially expressed surface proteins in Th1 Th2 and Th17 promoting Dendritic cells
  • 10/11-2010 - Fetal and post-natal programming of lipid accumulation in skeletal muscles in sheep
  • 05/11-2010 - Salmonella Infection, Diverse Gut Invasion Mechanisms and Distinct Local and Systemic Immune Cell Kinetics
  • 20/09-2010 - Tumor Suppressive Factors and Modulation of Dendritic Cells in Relation to Cancer Progression
  • 19/03-2010 - The Significance of NOD2 Mutations for Adhesion Ability of Invasive E. Coli Bacteria to Gut Epithelium from Crohn?s Disease Patients
  • 12/03-2010 - Endocytosis of Bacteria and Nanoparticles in Antigen Presenting Cells: Impact of Toll like Receptors
  • 26/02-2010 - Docosapentaenoic Acid (22:5n-3) Induces the Expression of Fat Oxidation Genes in a PPAR-? Dependent or Independent Mechanism?
  • 31/07-2009 - Effects of High-fat Intake during Pregnancy on Hepatic Fat-accumulation and Hepatic Expression of Genes Related to Fat Metabolism in Rat Pups
  • 26/06-2009 - Gut-invasion Mechanisms Exploited by Salmonella
  • 01/01-2009 - Immunomodulating proporties of selected human faecal bacterial isolates
  • 31/12-2008 - Dietary influence on immune maturation studied in newborn mice
  • 01/11-2008 - Anti-tumor activity of protein kinase inhibitor
  • 15/10-2008 - Validation of putative pharmacologically relevant target genes for the treatment of obesity and type II diabetes
  • 01/03-2008 - Significance of membrane fatty acid composition in Streptococcus thermophilus
  • 24/09-2007 - Maturation of the neonatal immune system: effect of maternal dietary fatty acid composition
  • 01/08-2007 - Significance of membrane fatty acid composition in Streptococcus thermophilus
  • 30/06-2007 - Immune modulation properties of dietary fibres
  • 31/05-2007 - The impact of dietary fat intake and obesity on sphingolipid metabolism in mice and man
  • 31/01-2007 - The influence of n-3 fatty acids on monocytic plasma membrane function
  • 30/06-2005 - The role of phospholipase A2 in endothelial cell migration
Integrative Systems Biology
  • 01/08-2014 - Using mass cytometry and computational methods to identify cellular stages in cancer
  • 21/04-2014 - Quantifying Influenza Impact from Diverse Surveillance Data
  • 30/09-2013 - Centralized Workflow Manager to simplify sharing and deployment of scientific software
  • 01/07-2013 - Data Mining of Drug Side Effects Extracted from Electronic Medical Records: a Case from Psychiatry with Focus on Epilepsy
  • 22/04-2013 - Automation of data mining for applications in vaccinology
  • 01/11-2012 - Data mining system for the development of universal influenza vaccine
  • 30/06-2011 - The Genetic Basis for Comorbidity
  • 01/02-2011 - An Integrated Computational Platform for Vaccine Target Discovery in Flavivirus spp.
  • 12/06-2009 - Analysis of the Pharmacological Space Based on PubChem Bioassay Data
  • 10/03-2008 - Tools to study transcriptional regulation of the cell-cycle
  • 05/10-2007 - Development of a Chemoinformatics database and tool for the Prediction of Compounds that could act as Leads in the Drug Development Pipeline
  • 01/07-2007 - Degradome project: A Bioinformatics approach to intracellular protein degradation
  • 22/07-2005 - Toxicity classification from NMR metabonomic data using artificial neural networks
  • 15/07-2005 - Scoring functions for protein-protein docking
  • 04/07-2005 - Prediction of spliceosomal introns in humane pre-mRNA
  • 01/04-2005 - Development of diagnostic assays for detection of retinal diseases
Molecular Evolution
  • 05/02-2014 - Emergence and Evolution of Genes - a Case Study in Caenorhabditis
  • 15/10-2013 - Emergence and evolution of novel genes - a case study in Caenorhabditis
  • 21/12-2012 - Emergence of novel genes and integration into host biology - a case study in Caenorhabditis
  • 22/10-2012 - Identification of genetic markers for prediction of bacterial lifestyle characteristics
  • 21/09-2012 - Prediction and design of effector molecules and a novel system for immunogenicity reduction
  • 17/08-2012 - Effects of synonymous mutations on phenotype
  • 20/06-2012 - A novel method of improving protein stability and serum half-life using protein design
  • 01/11-2011 - HIV tropisms and deregulated response patterns in dendritic cells
  • 10/06-2011 - Novel Apiaceae cytochromes P450 of the CYP71AJ subfamily: Combining functional yeast expression and in silico homology modeling in elucidating substrate specificity
  • 01/03-2011 - Molecular Genetic Basis of Type 2 Diabetes Mellitus, Metabolic Syndrome and Related Phenotypes
  • 02/01-2009 - Global Analyses of the Chemical Space of Ligands Binding to PPARs and Other Nuclear Receptors
  • 14/12-2007 - The role of suPAR in inflammation, an active participant or passive bystander?
  • 28/08-2006 - Optimizing RNA structure prediction by combination of multiple sequence analyses
  • 03/10-2005 - Analysis of the evolution of stop codons in pro-viral HIV DNA sequence
Metagenomics
  • 26/06-2014 - Metagenomic gene extensions
  • 02/04-2014 - Machine Learning Approach to Cytochrome P450 Identification
  • 26/08-2013 - Detecting life in next-generation sequencing data
  • 28/03-2013 - Searching for the Identity of Unknown Bacterial Species found in the Human Gut
  • 31/08-2012 - Understanding the role of small Meta-Genomic species in the human microbiome
  • 24/10-2011 - Comparison of probiotic bacterial core genes in Human Microbiome Samples
  • 22/08-2011 - Improved protein homology modelling using structure specific gap penalties and multiple templates
  • 31/07-2010 - Neural Network Based Computational Prediction of Chitinases in Microbial Communities
  • 20/11-2009 - Population Differentiation of SNP Affecting Post-translational Modification Sites in Disease-associated Proteins
Regulatory Genomics
  • 21/09-2014 - Epigenetic and transcriptional regulation of LINE1 elements in Embryonic Stem Cells
  • 28/05-2014 - Influence of antifoaming agents on the cellular performance of Saccharomyces cerevisiae in the Brazilian bioethanol industry
  • 14/03-2014 - Role of microRNA Processing in Adipose Tissue with Exercise and Aicar Treatment
  • 08/09-2013 - Modeling enzyme activity as a result of oxidative stress
  • 01/12-2012 - A pipeline for next generation sequencing-based epigenetic analysis
  • 17/10-2012 - Measuring and modeling the dynamics of protein translation in the yeast stress response
  • 30/08-2012 - Datamining of tRNA sequences for novel biological insight
  • 17/08-2012 - Effects of synonymous mutations on phenotype
  • 23/05-2011 - Designing expression level: Optimization and combination of central dogma predictive models
  • 27/11-2010 - Anaysis of difffentially expressed surface proteins in Th1 Th2 and Th17 promoting Dendritic cells
  • 27/09-2010 - Physiology of Protein Kinases and Phosphatases Mutants in the DNA Damage Response
  • 30/07-2010 - Adaptive Stress Response to Oxidative Stress
  • 03/05-2010 - Metabolic Modeling and Engineering of Escherichia coli for Glycerol Bioconversion
  • 31/05-2009 - Assessing the Functional Role of Protein Kinases and Phosphatases in the DNA Damage Response in Yeast
  • 10/03-2008 - Tools to study transcriptional regulation of the cell-cycle
  • 01/02-2008 - Investigation of genetic interactions in DNA mismatch repair pathways
Cancer Systems Biology
  • 22/05-2014 - Immunological selection and HLA allele-specific expression in human tumors
  • 01/10-2012 - Identification of cell type gene expression signatures
  • 29/08-2011 - OCELOT: A novel on-line cancer analysis tool to collect, integrate and analyse gene expression and clinical data



Special Courses

Behavioral Phenomics
  • 02/02-2014 - Inheritance of Personality Traits
  • 26/11-2012 - Identification of the optimal method for analysis of human faces in the context of finding associations to personality traits
  • 01/07-2012 - Identification of associations between facial features and personality traits
Computational Chemical Biology
  • 31/08-2013 - ?Communicating scientific results: Writing a scientific paper on a new approach for the identification of compounds? with anti-malarial activity
  • 01/08-2013 - Identification of structural variants in genes involved in medical side effects
  • 05/06-2013 - Prediction of ligand binding within human olfactory receptors
  • 28/02-2013 - Comparison of methods for the evaluation of 2D fingerprints for Virtual Screening
  • 21/12-2012 - Planning and execution of a research project: Searching for the next antimalarial drug
  • 21/12-2012 - Pilot Project on the development of MMP Sensitive Cationic Liposomes for the delivery of siRNA to cancer cells
  • 21/12-2012 - Pilot Project on in vitro studies of cationic liposomes with an MMP cleavable PEG layer
  • 19/10-2012 - Planning and management of projects from the biotech and pharma industry
  • 29/06-2012 - Ab-initio protein folding using Rosetta
  • 22/02-2012 - Evaluation of the Rosetta docking tool in relation to DNA- and ligand- interactions of the PF14_0633 domain.
  • 31/01-2012 - Chemoinformatics in drug discovery
  • 30/09-2011 - Analysis of small molecule agents in protein structures
  • 26/08-2011 - Application of chemoinformatics tools in nutrigenomics studies
  • 03/06-2011 - Clustering of central nervous system diseases based on their metabolic fingerprint
  • 31/05-2011 - Mapping of metabolites on the bacterial space
  • 31/08-2010 - Gene expression data mining of drugs using cMAP
  • 17/05-2010 - Recent Approaches for the Identification of Novel "Druggable" Targets
Functional Human Variation
  • 01/03-2011 - A Systems View on Chronic Lymphocytic Leukemia
Protein and Immune Systems Biology
  • 20/06-2014 - Tracing microorganisms in Human Kidney biopsies
  • 14/02-2014 - Characterization of a Georgian Bacteriophage Cocktail
  • 22/01-2014 - Analysis of structural changes in B-cell epitopes upon Antibody complex formation
  • 23/12-2013 - Improving the PickPocket method for predicting MHC class II ligands using different PSSM approaches
  • 15/11-2013 - Optimization of construction of phylogenetic trees based on whole genome data
  • 11/10-2013 - Benchmarking of a method for species identification from whole genome sequencing data
  • 15/08-2013 - Specific primer identification for clonal vancomycin resistant Enterococcus differentiation
  • 01/07-2013 - Exploring simultaneous peptide clustering and neural network training for predicting peptide affinities to multiple MHC alleles
  • 28/06-2013 - Benchmarking of a method for species identification from whole genome sequencing data
  • 01/06-2013 - B-cell epitopes in polymorphic regions of human proteins
  • 17/05-2013 - Cellular and humoral immune response in mice; test for single epitope responses selected by bioinformatics
  • 16/05-2013 - Python for bioinformaticians
  • 16/05-2013 - Comparing immunogenicity of biopharmaceuticals to SNPs in MHCII epitopes
  • 25/04-2013 - Building a prediction tool for HIV Protease cleavage sites using artificial neural networks
  • 21/12-2012 - Bioinformatics Programming Using Python
  • 20/12-2012 - Writing a scientific paper based on bachelor project
  • 22/11-2012 - MHCcluster, an interactive web-based method for functional clustering of MHC molecules
  • 01/02-2012 - HLA allele specific dominant effects determined using verified HIV CTL epitopes
  • 15/12-2011 - Evaluation of CTL Epitope predtions at Peptide Length Larger than 10 Amino Acid Residues
  • 02/12-2011 - Analysis of FACS data using probability binning
  • 01/11-2011 - Python programming in Bioinformatics
  • 25/08-2011 - Improvement of predictions of MHC-I-peptide binding affinities using combined data from 9, 10 and 11 mer peptides
  • 24/08-2011 - Effect of primary sequence on the expression of antibodies
  • 01/07-2011 - Analysis of FACS data using R
  • 11/02-2011 - HLA allele specific dominanse of verified HIV CTL epitopes
  • 01/02-2011 - Improved Protein Homology Modeling Using Structure Specific Gap Penalties
  • 31/01-2011 - A method for identification of receptor-ligand interactions by artificial neural network decomposition. Applied to the peptide:MHC system
  • 28/01-2011 - Improvement of predictions of MHC-peptide binding affinities using initial classification predictions
  • 21/01-2011 - Influence of the Cellular Immune Response on Specific Resistance Mutations in HIV
  • 21/01-2011 - Introduction to programming in Python
  • 21/01-2011 - Preparation of a scientific manuscript regarding own research and submission to an international peer reviewed journal
  • 20/01-2011 - Python programming of tool for analysis of protein structures in relation to improvement of B-cell epitope predictions
  • 31/12-2010 - Evaluation of MHC-peptide Binding Predictors at Peptide Length Larger than 11 Amino Acid Residues
  • 14/12-2010 - Sequence Analysis in t-cell Epitopes and Antigens
  • 03/12-2010 - Improvement of MHC-peptide Binding Affinity Predictions Using Neural Networks Trained on Classification Data
  • 24/09-2010 - Competitive Influences of Anti-CD8 Antibodies on MHC Dextramer Binding to Antigen-specific T-cells
  • 01/07-2010 - A Bioinformatic Approach to Predict Immunogenecity in Therapeutic Proteins
  • 25/06-2010 - Improvement of MHC:Peptide Binding Prediction by Use of Classification Networks
  • 20/06-2010 - Identification of MHC Class I Ligands Using MHC Binding and Stability Predictions
  • 18/06-2010 - Effects of Antibody Mixtures
  • 15/05-2010 - Structural Properties of MHC Class II Ligands, Implications for Predictions of MHC Class II Epitopes
  • 04/01-2010 - Genotyping and Determination of Genotypic Resistance of HBV
Systems Biology of Immune Regulation
  • 27/06-2014 - Cancer Immunology and Immunotherapy
  • 06/06-2014 - Nutrition with special focus on the role of the gut microbiota
  • 03/02-2014 - Cellular and humoral immune response in mice; test for single epitope responses selected by bioinformatics
  • 31/01-2014 - Changes in basal metabolism during diabetes development and nutritional strategies to prevent diabetes
  • 31/01-2014 - Role of STAT3 in PD-L1 expression in T regulatory cells
  • 24/01-2014 - Health, Disease and Technology
  • 05/01-2014 - Effects on short-chain fatty acid composition of fatty acid induced compostional changes in the fecal microbioata from human babies
  • 12/12-2013 - Implications of household dust endotoxins in relation to development of childhood asthma
  • 02/12-2013 - Immunology
  • 01/12-2013 - Effects of a novel treatment of metabolic diseases on triglyceride and glycogen content in skeletal muscles and the liver
  • 09/09-2013 - The role of the innate immune system in sub-clinical inflammation
  • 31/08-2013 - Experimental methods for phenotypic characterisation of murine skeletal muscle
  • 28/06-2013 - Purification and characterization of Chlamydia trachomatis proteins with altered expression under IFN-g mediated persistence
  • 28/06-2013 - Detection and Characterization of EGFR/HER2/HER3 proteins in selected cancer cell lines
  • 07/06-2013 - Analysis of short-chained fatty acids in fermentation fluids from anaerobic fermentation of infant fecal microbioata
  • 17/05-2013 - Cellular and humoral immune response in mice; test for single epitope responses selected by bioinformatics
  • 08/02-2013 - Effects of the gut microbioata on bile acid composition and re-absorption, and its effects on hetaptic bile acid signalling
  • 31/01-2013 - Inter-individual prevalence of specific mucosal bacteria and their impact on host immunity
  • 31/01-2013 - Methodology for detection of acylation degree of endotoxins
  • 21/12-2012 - Biochemical and structural characterization of multi-protein complexes in cellular autophagy
  • 19/10-2012 - Lipidomics
  • 29/06-2012 - Bioactive Components and Nutrigenomics
  • 23/06-2012 - Delineation of microbial synthesis pathways essential for host immunity
  • 20/04-2012 - RNA interference in primary mammalian cells
  • 31/01-2012 - Integration of functional and genomic signatures from gut-associated bacteria
  • 20/01-2012 - How does the maternal diet during pregnancy and lactation affect expression of genes in lipidmetabolism in adipose tissue in 4 weeks old offspring?
  • 06/01-2012 - Cord blood immune phenotypes in relation to maternal atopic status
  • 05/01-2012 - Characterization of immune cells in 18-months-old children with focus on deregulation in atopic diseases
  • 31/12-2011 - Gut epithelial adhesion and invasion abilities of Salmonella spp during growth on different carbohydrate/prebiotic sources
  • 22/12-2011 - The role of IL-1b in adipocyte regulation
  • 31/08-2011 - Does the maternal energy-intake affect the expression of genes related to thermogenesis in brown adipose tissue in the newborn offspring?
  • 29/08-2011 - Bioactive Components and Nutrigenomics
  • 12/08-2011 - Analysis of a novel calibration method for electronic nose data acquisition in relation to atopic childhood diseases
  • 08/07-2011 - Identification of leukocyte subsets in flow cytometry by use of unsupervised learning methods.
  • 08/07-2011 - Cytokine Response Profiles and Activation Dynamics of Neonatal T cell Subsets
  • 27/06-2011 - HIV vaccine strategies: the impact of viral structure for immune evasion mechanisms and vaccine potency
  • 01/06-2011 - Interactions between phenolic compounds in food and drugs affecting the prostaglandin pathway
  • 09/05-2011 - Interaction between leptin and the T-cell phenotype in adipose inflammation
  • 30/01-2011 - Comparative Genomics of Asthma Related Pathogens and other Airway Bacteria
  • 21/01-2011 - Different factors affecting the development of obesity-induced sub-clinical inflammation and metabolic syndrome
  • 20/12-2010 - Lifestyle Diseases and Functional Food
  • 20/08-2010 - Composition and comparison of the human gut and respiratory microbiota
  • 16/08-2010 - Immune Responses of the Lung
  • 02/07-2010 - Salmonella typhimurium infection - Microbiology, immunology and biochemical methods
  • 25/06-2010 - Effects of pytanic acid on markers of metabolic function in obese mice
  • 25/06-2010 - Bacterial Colonisation of the Human Respiratory Tract
  • 01/06-2010 - Health Benefits of Moderate Alcohol Consumption
  • 30/05-2010 - Implementing an Assay of Fatty Acid Oxidation in Hepatocytes
  • 11/05-2010 - Inflammation in Adipose Tissue ? Background, Development and Importance for Lifestyle-related Diseases
  • 15/04-2010 - Health-promoting bioactive diet and development of laboratory exercises
  • 12/03-2010 - Replacement project for 27732 Human Nutrition
  • 29/01-2010 - Investigation of Breast Cancer Tumors: Microenvironment, Properties and Involvement of Different Factors
  • 29/01-2010 - The importance of Dietary-fat Composition during Establishment of the Gut Microbiota on Short-chain Fatty Acid Concentration in Colon Content of Mice
Integrative Systems Biology
  • 30/10-2013 - Bioinformatics analysis of second generation sequencing data for the identification of structural variation in cancer
  • 30/09-2013 - Advanced Immunoinformatics
  • 30/08-2013 - Advanced Microarray studies
  • 22/04-2013 - Analysis and mapping of aneuploidy genome data to protein complexes in breast cancer
  • 15/04-2013 - Analysis and mapping of aneuploidy genome data to protein complexes in breast cancer
  • 09/10-2012 - Independent development of high performance statistical software pipelines and dynamic web-interfaces
  • 01/07-2012 - Benchmarking of Text-mining Methods
  • 01/02-2012 - Advanced Immunoinformatics
  • 25/08-2011 - Crystal structures of putative phosphoglycerate kinases from B. anthracis and C. jejuni
  • 01/07-2011 - Textmining of clinical data (27009 Fagprojekt)
  • 01/06-2011 - Interactions between phenolic compounds in food and drugs affecting the prostaglandin pathway
  • 31/05-2011 - Mapping of metabolites on the bacterial space
  • 25/06-2010 - A Gene Expression Analysis of Chronic Lymphocytic Leukemia
  • 01/05-2010 - Advanced Immunoinformatics
Molecular Evolution
  • 31/08-2013 - ?Communicating scientific results: Writing a scientific paper on a new approach for the identification of compounds? with anti-malarial activity
  • 14/06-2013 - Introduction to Bayesian Statistics
  • 16/05-2013 - Introduction to Bayesian Statistics
  • 25/01-2013 - Bayesian statistics
  • 21/12-2012 - Planning and execution of a research project: Searching for the next antimalarial drug
  • 26/10-2012 - Viral gL proteins are related to chemokines
  • 03/05-2012 - Evolution of cell cycle proteins - literature and feasibility study
  • 30/03-2012 - Identification of genetic markers relevant to bacterial optimum temperature
  • 15/02-2012 - Investigation into the effects of immunization with subdominant cytotoxic T-lymphocyte epitopes on the HIV-1 genome of treatment-naive chronic patients
  • 01/11-2011 - Python programming in Bioinformatics
  • 15/10-2011 - Project management in practice: Development of a virtual bio-laboratory
  • 30/09-2011 - Evolutionary botany
  • 24/08-2011 - Effect of primary sequence on the expression of antibodies
  • 01/07-2011 - Novel docking protocol to analyze ligand binding poses in comparative 7TM models using mutational data
  • 01/06-2011 - Optimizing Protein Solubility and Stability using Computational Protein Design
  • 23/05-2011 - Bayesian modeling of intron number distributions
  • 19/02-2011 - Kinetic and Computational Studies of De Novo Designed Kemp Elimination Enzymes
  • 28/01-2011 - Intensive Perl
  • 14/01-2011 - Homology Modeling and Docking Studies of G protein-coupled receptor 119
  • 03/12-2010 - Improvement of MHC-peptide Binding Affinity Predictions Using Neural Networks Trained on Classification Data
  • 29/01-2010 - Next Generation Sequencing of Pestivirus Genomes
Metagenomics
  • 24/01-2014 - Introduction to bioinformatics
  • 24/01-2014 - Genetic Biomarkers for Colorectal Cancer
  • 01/01-2014 - Insilico prediction of characteristics of metagenomic habitats
  • 07/10-2013 - De novo assembly of Eucalyptus cladocalyx and identification of CYP79 gene clusters
  • 16/03-2012 - Introduction to Systems Biology
  • 08/12-2011 - Prediction of protein stability by use of artificial neural networks
  • 01/07-2011 - Metagenomics and transcriptomics analysis of the human gut microbiome in context of Inflammatory Bowel Disease
  • 04/01-2010 - Metagenomics of Cold-adapted Enzymes
Regulatory Genomics
  • 31/01-2014 - ChIP-Seq Data Analysis
  • 06/12-2013 - Protein level prediction from genomic information
  • 01/10-2013 - International Genetic Engineering Competition (iGEM)
  • 30/08-2012 - Training for analysis of CAGE and miRNA sequencing data
  • 29/11-2011 - DNA Microarray Analysis
  • 02/10-2011 - International Genetic Engineering Competition (iGEM)
  • 20/08-2011 - Introduction to Systems Biology
  • 15/06-2011 - Copper response mechanisms in Yeast
  • 15/04-2011 - Introduction to Systems Biology
  • 03/12-2010 - Efficient software design for biological sequence analysis using C++
  • 01/11-2010 - iGEM Project
  • 30/05-2010 - Microarray and HPLC Analysis of the S. Pombe Oxidative Stress Response
  • 17/05-2010 - Programming for the Ambitious Biologist
  • 17/05-2010 - Interactive Visualization of Time-series Data
  • 02/04-2010 - High throughput data analysis in R
Cancer Systems Biology
  • 01/01-2014 - Predicting tumor origin from mutation patterns using the random forest algorithm
  • 06/09-2013 - HLA downregulation in human tumors
  • 22/04-2013 - Analysis and mapping of aneuploidy genome data to protein complexes in breast cancer
  • 15/04-2013 - Analysis and mapping of aneuploidy genome data to protein complexes in breast cancer



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