Immunological Bioinformatics Projects

• 01/12-2011 - A novel method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid enrichment and depletion
• 30/06-2011 - Validation of predictors of discontinous B-cell epitopes using homology modelled 3-D protein structures
• 30/06-2011 - Prediction of the immunogenicity of therapeutic antibodies
• 15/06-2011 - Validtion of multi-layer multi-valued neural networks
• 10/12-2010 - Immunological pressure and molecular evolution of Influenza A virus
• 20/12-2009 - Molecular Evolution of Influenza A Virus
• 26/06-2009 - Selection and Validation of CTL Responding Peptides by Bioinformatics Methods
• 07/05-2009 - Structural Properties of MHC Class II Ligands
• 23/01-2009 - Molecular Evolution of Influenza A Virus
• 19/12-2008 - Implementation and validation of a stabilization matrix method for peptide:MHC binding predictions
• 30/06-2008 - Peptide binding based substitution matrices in epitope prediction

• 31/05-2012 - Analysis of overlap between pathogenic and human peptides in MHC binding and presentation
• 07/11-2011 - Peptide overlap between humans and human pathogens
• 19/09-2011 - Identification of position specific receptor-ligant interactions by use of artificial neural network decomposition. An investigation of interactions in the MHC:peptide system
• 22/08-2011 - Improved protein homology modelling using structure specific gap penalties and multiple templates
• 15/04-2011 - Evaluation of HIV-1 CCR5/CXCR4 Tropism in Danish HIV Infected Patients
• 31/03-2011 - Analysis of B-cell epitopes based on structural analysis of 3D antigen-antibody interactions
• 25/03-2011 - Define Optimal Conditions for Assaying of Low-affinity TCR-MHC Interactions Using MHC Multimers
• 15/03-2011 - Analysis of Individual and Mixtures of Antibodies
• 14/02-2011 - In Silico Immunogenicity Evaluation and Commercialisation of a Protein Drug
• 30/06-2010 - In Silico Prediction of T Cell Receptor Specificity
• 01/03-2010 - Analysis of Malaria Proteins
• 31/07-2009 - Swine SLA Clustering Using Sequence and Specificity Similariity
• 30/06-2009 - In Silico Prediction of Bacterial Pathogenicity
• 03/03-2009 - Structure-guided Prediction of MHC-II Ligand Binding
• 20/08-2007 - Computational Mapping of Antibody Binding Sites in HIV
• 06/08-2007 - Prediction of local structure elements using artificial neural networks
• 06/07-2007 - Feature based discrimination of antigenes in Malaria
• 31/07-2006 - Implementation and Evaluation of Protein Potentials: Applications to Immunological Problems
• 28/07-2006 - Epitope prediction in arenaviruses
• 01/04-2005 - Development of diagnostic assays for detection of retinal diseases

• 01/02-2012 - HLA allele specific dominant effects determined using verified HIV CTL epitopes
• 15/12-2011 - Evaluation of CTL Epitope predtions at Peptide Length Larger than 10 Amino Acid Residues
• 02/12-2011 - Analysis of FACS data using probability binning
• 01/11-2011 - Python programming in Bioinformatics
• 25/08-2011 - Improvement of predictions of MHC-I-peptide binding affinities using combined data from 9, 10 and 11 mer peptides
• 24/08-2011 - Effect of primary sequence on the expression of antibodies
• 01/07-2011 - Analysis of FACS data using R
• 11/02-2011 - HLA allele specific dominanse of verified HIV CTL epitopes
• 01/02-2011 - Improved Protein Homology Modeling Using Structure Specific Gap Penalties
• 31/01-2011 - A method for identification of receptor-ligand interactions by artificial neural network decomposition. Applied to the peptide:MHC system
• 28/01-2011 - Improvement of predictions of MHC-peptide binding affinities using initial classification predictions
• 21/01-2011 - Influence of the Cellular Immune Response on Specific Resistance Mutations in HIV
• 21/01-2011 - Preparation of a scientific manuscript regarding own research and submission to an international peer reviewed journal
• 21/01-2011 - Introduction to programming in Python
• 20/01-2011 - Python programming of tool for analysis of protein structures in relation to improvement of B-cell epitope predictions
• 31/12-2010 - Evaluation of MHC-peptide Binding Predictors at Peptide Length Larger than 11 Amino Acid Residues
• 14/12-2010 - Sequence Analysis in t-cell Epitopes and Antigens
• 03/12-2010 - Improvement of MHC-peptide Binding Affinity Predictions Using Neural Networks Trained on Classification Data
• 24/09-2010 - Competitive Influences of Anti-CD8 Antibodies on MHC Dextramer Binding to Antigen-specific T-cells
• 01/07-2010 - A Bioinformatic Approach to Predict Immunogenecity in Therapeutic Proteins
• 25/06-2010 - Improvement of MHC:Peptide Binding Prediction by Use of Classification Networks
• 20/06-2010 - Identification of MHC Class I Ligands Using MHC Binding and Stability Predictions
• 18/06-2010 - Effects of Antibody Mixtures
• 15/05-2010 - Structural Properties of MHC Class II Ligands, Implications for Predictions of MHC Class II Epitopes
• 04/01-2010 - Genotyping and Determination of Genotypic Resistance of HBV
• 07/12-2009 - Immunological Applications of Contact Potentials

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