Events

2009

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• Computational tools and Interoperability in Comparative Genomics
  PhD Lecture by Peter Fischer Hallin, CBS, December 7, 2009.
  
  
• Bioinformatics Analysis of Peptide:Protein Binding
  PhD Lecture by Hao Zhang, CBS, December 14, 2009.
  
  
• Immunological Bioinformatics
  Inaugural Lecture by Ole Lund, CBS, November 27, 2009.
  
  
• Systems biology analysis of pre-mRNA splicing and alternative splicing, and its role in cancers
  PhD Lecture by Kai Wang, CBS, September 7, 2009.
  
  
• Degenerate Peptide Specificity of MHC Molecules and T cell Receptors in Immunodominance and Tolerance
  PhD Lecture by Sune Pletscher-Frankild, CBS, August 21, 2009.
  
  
• Prediction and analysis of MHC class I binding specificities beyond humans
  PhD Lecture by Ilka Hoof, CBS, June 4, 2009.
  
  
• Integrative analyses of complex phenotypes
  PhD Lecture by Niclas Tue Hansen, CBS, May 13, 2009.
  
  
• Bioinformatics and simulation of the immune system
  PhD Lecture by Nicolas Rapin, CBS, May 7, 2009.
  
  
• Genome - and HLA-Wide Scanning and Validation of Cytotoxic CD8+ T Cell Responses in Bacterial and Viral Pathogens
  PhD Lecture by Sheila Tuyet Tang, CBS, February 27, 2009.
  
  2008

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• FOBI Network Meeting "Beyond the PhD" on November 28, 2008
  The meeting goal was partly to inform about possibilities for employment beyond the PhD - and partly to get to know other PhD student within biotechnology at DTU Systems Biology, KU LIFE and and KU SUND.
  
  
• Symposium for Biotech Research 2008
  Symposium for Biotech Research (SBR) 2008 brought the best of academic and corporate biotech research together in a spectacular one-day event on November 13, 2008.
  
  
• CBS 15th Anniversary
  On September 16, 2008, the Center for Biological Sequence Analysis celebrated its 15th anniversary with an by-invitation-only alumni event.
  
  
• Bioinformatics and systems biology of human diseases
  PhD Lecture by Kasper Lage, CBS, August 14, 2008.
  
  
• Linear motifs in phosphorylation-dependent signalling
  PhD Lecture by Martin Miller, CBS, June 25, 2008.
  
  
• MedVetNet Microarray Data Analysis Workshop
  Workshop at CBS, May 14 - 16, 2008.
  
  
• Directed evolution as a tool for dissecting protein-protein interactions and developing novel protein therapeutics
  Talk by Eric Sundberg, Ph D, Boston Biomedical Research Institute at CBS, March 26, 2008.
  
  
• Contributions to the study of coevolution, at micro and macroscales
  PhD Lecture by Rodrigo Gouveia-Oliveira, CBS, February 21, 2008.
  
  
• Integration of heterogeneous interaction data - Understanding transcriptional regulation
  Talk by Andreas Beyer, Group Leader at the Biotechnology Center, Technical University of Dresden, Germany, February 18, 2008.
  
  2007

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• Black Swans and White Tablets
  Chemoninformatics talk by Professor Tudor I. Oprea, University of New Mexico, USA, December 17, 2007.
  
  
• Chemoinformatics in Drug Development
  Mini-symposium, November 19, 2007.
  
  
• Data mining and data integration in biology PhD Lecture by Páll Ísólfur Ólason, CBS, October 25, 2007.
  
  
• Genome dynamics in bacterial pathogens
  Talk by Julian Parkhill, The Sanger Institute, Cambridge, England, October 12, 2007.
  
  
• Prediction and identification of B-cell epitopes using protein structure information
  PhD Lecture by Pernille Andersen, CBS, September 14, 2007.
  
  
• Computational Analysis and Modeling of Bacterial Pathogenesis
  PhD Lecture by Tim Binnewies, CBS, July 12, 2007.
  
  
• Application of in vitro gene expression signatures for in vivo cancer response prediction
  Talk by Dr. Balazs Gyorffy, Semmelweis University, Budapest, Hungary AND Institute of Pathology, Charite, Berlin, Germany, May 9, 2007.
  
  
• Prediction of T-cell Epitopes for Therapeutic and Prophylactic Vaccines
  PhD Lecture by Mette Voldby Larsen, CBS, May 3, 2007.
  
  
• EMBRACE Workshop on Bioinformatics of Immunology
  Workshop at CBS on January 24 - 26, 2007.
  
  2006

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• Dynamics of chromosome segregation in bacteria
  PhD Lecture by Henrik J?rck Nielsen, CBS, December 20, 2006.
  
  
• Danish Biotechnological Society: Annual DBS Lecture and Annual DBS awards
  Matthias Uhlen, Royal Institute of Technology, Sweden; Simon Bekker-Jensen, Danish Cancer Society and Ulrik de Lichtenberg, CBS
  November 30, 2006
  
  
• Systematic Discovery of In Vivo Phosphorylation Networks
  Lecture by Rune Linding, PhD, HFSP Fellow, Center for Cancer Research, Massachusetts Institute of Technology, Boston, USA, November 24, 2006.
  
  
• Thermophysical properties and thermodynamic phase behaviour of ionic liquids
  Lecture by Professor Urszula Domanska-Zelazna, Faculty of Chemistry, Warsaw University of Technology, Poland, November 10, 2006.
  
  
• DNA Microarrays in Comparative Genomics and Transcriptomics
  PhD Lecture by Hanni Willenbrock, CBS, October 27, 2006.
  
  
• Pathway Bioinformatics: Inference, Visualization, and Analysis
  Talk by Peter D. Karp, Director, Bioinformatics Research Group, SRI International, Menlo Park, USA, September 27, 2006.
  
  
• SME Chemoinformatics Workshop: Data Analysis of Chemical Compounds with Chemoinformatics Methods
  September 22, 2006 at CBS, DTU.
  
  
• A new Bacterial Protein-sorting Signal System:application of "Partial" Phylogenetic Profiling and other fun bioinformatic tricks
  Talk by Jeremy Selengut, TIGR (The Institute for Genomic Research), Rockville, Maryland, USA, September 8, 2006.
  
  
• Systems Biology Approach to Multivariate Modeling of Biological Systems
  Talk by Sampsa Hautaniemi, Massachusetts Institute of Technology, Cambridge, USA, June 8, 2006.
  
  
• Barley genes in action: Transcriptome analysis of developing barley embryos
  PhD Lecture by Mads Eggert Nielsen, CBS, DTU, May 22, 2006.
  
  
• Quantitative Proteomic Analysis of Cellular Signaling Networks
  Talk by Forest M. White, Biological Engineering, MIT, Cambridge, MA, USA, April 25, 2006
  
  
• Host protective mechanisms against tularemia and prospects to develop a vaccine
  Talk by Professor, Dr.Med Sc. Anders Sjöstedt, Department of Clinical Bacteriology, University of Umeå, Sweden, April 6, 2006
  
  
• Mining sequence annotation databanks for association patterns
  Talk by Professor Dmitrij Frishman (co-founder of the MPIS Database), Department of Genome Oriented Bioinformatics, Technical University of Munich, Germany, February 2, 2006.
  
  
• Genome-wide prediction and analysis of transcription factor repertoires
  Talk by Sarah A. Teichmann, MRC Laboratory of Molecular Biology, Cambridge, UK, January 30, 2006.
  
  2005

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• 1st Annual BioSys Conference on: Industrial Applications of Bioinformatics and Systems Biology
  The Royal Library - the Black Diamond, Copenhagen, November 15, 2005.
  
  
• BioSys workshop on: Chemogenomics in Drug Development
  Invited speakers: Professor Jordi Mestres, Universitat Pompeu Fabra, Barcelona, Spain; Professor Nils Weskam, University of Marburg, Germany; Associate Professor Svava Ósk Jónsdóttir, CBS. November 11, 2005.
  
  
• Integrating protein feature based predictions into S ystems Biology
  PhD lecture by Anders Fausbøll, Center for Biological Sequence Analysis, November 7, 2005.
  
  
• Minisymposium: Chemoinformatics in Drug Research
  Arranged by CBS and DFU, October 31, 2005.
  
  
• Immunologic and Virologic Evolution in HIV-1 Infected Patients
  Talk by Annika C. Karlsson, The Swedish Institute for Infectious Disease Control (SMI), Deparment of Virology, September 30, 2005.
  
  
• A Systems Biology Investigation and Comparison of the Cel l Cycle in Eukaryotic Cells
  PhD Lecture by Thomas Skøt Jensen, CBS, DTU, September 8, 2005.
  
  
• Complex biological queries on the protein interaction network
  Talk by Principal Investigator Trey Ideker, Laboratory for Integrative Network Biology, UCSD, September 5, 2005.
  
  
• Systems Biology of the Eukaryotic Cell Cycle
  PhD Lecture byUlrik Nicolai de Lichtenberg, CBS, September 5, 2005.
  
  
• Amino acid sequence analyses in the post-genome era: Efficiency of in-vitro protein synthesis and variety of alternatively-spliced isoforms
  Talk by Professor Kenta Nakai, University of Tokyo, August 17, 2005.
  
  
• Chasing mi(cro)RNA genes and targets in plants
  Talk by BioInformatics Team Leader Pierre Rouze, Department of Plant Systems Biology,Ghent University, August 18, 2005.
  
  
• Analysis of HIV-1 Envelope Glycoprotein Structure for Improved Immunogen Design
  Talk by Professor Richard Wyatt, Structural Virology Section, Vaccine Research Center, National Institute of Allergy and Infectious Diseases, NIH, Monday, August 1, 2005
  
  
• Stress-Induced Duplex Destabilization (SIDD): Wha t it is and what it does
  Talk by Craig J. Benham, UC Davis, July 1, 2005
  
  
• Computational candidate gene prioritization by genomic data fusion<
  Seminar by Yves Moreau, K.U.Leuven ESAT-SCD, Belgium, June 7, 2005
  
  
• Horizontal gene transfer and the evolution of global regulatory circuits in bacteria
  Talk by Charlie Dorman, Trinity College, Dublin, Wednesday, May 4, 2005.
  
  
• A Family Resemblance: Comparative Biology of Fur Proteins
  Talk by John Helmann, Cornell University, New York, April 26, 2005.
  
  
• Campylobacter lifestyle in the gut
  Talk by Alain Stintzi, College of Veterinary Medicine, Oklahoma State University, April 25, 2005.
  
  
• Potentials of Mean Force (PMF): A framework for the compu tational modeling of Biomolecule-Solvent interactions
  Talk by guest professor Dikeos Mario Soumpasis, CBS, April 6, 2005
  
  
• Prediction and Analysis of Protein Motifs
  PhD lecture by Lars Kiemer, CBS, March 8, 2005
  
  
• Transcription control reprogramming in genetic backup circuit s
  Yitzhak Pilpel, Department of Molecular Genetics, Weizmann Institute of Science, Israel, March 3, 2005.
  
  
• Signal Transduction in bacteria - The essential YycFG two-comp onent system in Bacillus subtilis ,
  Kevin Devine, CBS/Trinity College, Dublin, Ireland, February 28, 2005
  
  
• Chemoinformatics and ADMET - Definitions, Applications and Perspectives ,
  Flemming Steen Jørgensen, Department of Medicinal Chemistry, Danish University of Pharmaceutical Sciences, Wednesday, February 23, 2005.
  
  2004

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• STRING: Prediction of functional association network for the yeast mitochondrial system,
  Lars Juhl Jensen, EMBL, Heidelberg, Germany, December 14, 2004
  
  
• Peptide Microarrays for Enzyme Profiling
  Mike Schutkowski, JPT - Jerini Peptide Technologies, Berlin, Germany, Monday, November 8, 2004.
  
  
• Regional Biases on Microarrays and Quality Assessment
  Mark Reimers, National Cancer Institute, NIH, USA, Tuesday, October 5, 2004.
  
  
• Biological Sequence Analysis of Archeal Genome s,
  PhD lecture by Marie Skovgaard, CBS, Thursday, September 2, 2004.
  
  
• Mitochondrial Evolution: Turning Bugs into Features
  Talk by Olof Karlberg, Department of Molecular Evolution, Uppsala University, Sweden, Thursday, August 26, 2004.
  
  
• Protein Dossier and STING Report: the Data Base and User Interface of the Physical-Chemical Parameters Describing the Protein Structure and Function, Seminar by Goran Neshich, Nucleo de BioInformatica Estrutural, Embrapa Informática Agropecuária, Campinas, Brasil, August 10, 2004.
  
  
• Analysis and Prediction of Translocation Signals in Eukaryotes and Prokaryotes
  PhD lecture by Jannick D. Bendtsen, CBS, June 22, 2004.
  
  
• Genomic Analyses and Protein Secretion in Bacillus Su btilis
  Talk by Sierd Bron, Institute for Education in Biology, Groningen University, June 22, 2004.
  
  
• Computational Vaccinology
  Talk by Dr Darren R Flower, Edward Jenner Institute for Vaccine Research, Berkshire, UK, June 9, 2004.
  
  
• To Visualise the Making of an Enterobacterial Plant Pathogen: Erwinia Carotovora Atroseptica
  Talk by Leighton Pritchard, Scottish Crop Research Institute, Invergowrie, Dundee, May 21, 2004.
  
  
• Advanced Microarray Data Analysis
  May 17 - 21, 2004; NorFA course for PhD students and postdocs
  
  
• Development of a Homeobox Gene Expression Chip and its Applications in Characterisation of Developmental Defects and Cancers
  Talk by Mads Bak, Wilhelm Johannsen Centre for Functional Genome Research, Institute of Medical Biochemistry and Genetics, University of Copenhagen, May 12, 2004
  
  
• Gene Expression Pattern Analysis: Clustering and other Analysis Tools
  Talk by Javier Herrero, Centro Nacional de Investigaciones Oncologicas, Madrid, Spain, April 28, 2004
  
  
• Network Informatics: Approaches for Mining Molecular I nteraction Networks
  Talk by Christopher Workman, PhD, University of California San Diego, April 21, 2004
  
  
• Computer Viruses as a Paradigm for Infectious Diseases< /b>
  Talk by Dr. Trudy M. Wassenaar, Zotzenheim, Germany, March 17, 2004
  
  
• Morgendagens Diagnostik med DNA Chips (T ANKEFULDE TIRSDAGE)
  Talk by professor Steen Knudsen, CBS, Tuesday, March 9, 2004
  
  
• Integrative Approaches to the Analysis of Microarrays Expression Data: Application to High-density Oligonucleotide Arrays
  PhD Lecture by Laurent Gautier, CBS, Wednesday, January 28, 2004
  
  2003

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• Characterizing Selective Pressures and Detecting Fun ctional Change in Protein Encoding Genes
  Talk by associate professor David Liberles, Computational Biology Unit, Bergen Center for Computational Science, University of Bergen, Norway, Thursday, November 27, 2003
  
  
• Transforming Microarray Data to Stabilize the Variance
  Talk by Laurent Gautier, CBS, Wednesday, November 12, 2003.
  
  
• DNA Structural Transitions and Transcriptional Regulat ion in E. Coli
  Seminar by Professor Craig J. Benham,Department of Mathematics and Biomedical Engineering, University of California, Davis, Friday, November 14, 2003
  
  
• Analysis of Gene Expression and Regulatory Networks
  Ph.D. lecture by Carsten Friis, CBS, Friday, October 24, 2003.
  
  
• There and Back Again - Constructing and interpretin g networks of functional associations
  Lars Juhl Jensen, EMBL, Heidelberg, Germany, October 2, 2003
  
  
• Extracting Taxonomic Information from Whole Genome Sequences - or - Genomics for Taxonomists
  Tom Coenye, Ph.D., Laboratory of Microbiology, Ghent University, Ghent, Belgium, July 16, 2003
  
  
• Towards the simulation of biological processes,
  Professor Chris Sander, Computational Biology Center, Memorial Sloan Kettering Cancer Center, New York July 2, 2003.
  
  
• Prediction of microRNA targets,
  Debora Marks, Center for Computational Biology and Bioinformatics, Columbia Genome Center, New York, July 2, 2003
  
  
• Microarray Data Analysis
  Ph.D. lecture by Henrik Bjørn Nielsen, CBS, Monday, May 12, 2003.
  
  
• The key to the eradication of Helicobacter pylori is persi stence
  Seminar by Professor Peter Jenks, Institute of Infections and Immunity, University Hospital, Nottingham, UK, April 10, 2003
  
  
• Contagious proteins: Prions and the "protein only" hypothe sis
  Seminar by Henrik Dyrbye,Department of Neuropathology, Rigshospitalet, Copenhagen, March 19, 2003
  
  
• The ELM resource
  Talk by Rune Linding, EMBL Biocomputing Unit, Heidelberg, Germany, March 5, 2003
  
  
• Campylobacter jejuni: investigation of the molecular basis of colonisation and pathogenesis
  Seminar by Diane G. Newell, Veterinary Laboratories Agency, Surrey UK, February 17, 2003
  
  
• mRNA stability determinants in B. Subtilis
  Talk b y Gustav Hambraeus, Lund University, February 5, 2003
  
  
• Bacterial toxins as food poisons
  Talk by Per Einar Granum, Wednesday, January 15, 2003
  
  2002

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• Regulation of transcription in Bacillus subtilis< /a>
  Ph.D. lecture by Hanne Østergaard Jarmer, Monday, November 25, 2002.
  
  
• Prediction of protein function from sequence derived protein features
  Ph.D. lecture by Lars Juhl Jensen, Wednesday, October 23, 2002.
  
  
• Gene and motif finding in prokaryotic DNA using hidden Markov models
  Ph.D. lecture by Thomas Schou Larsen, Thursday, October 3, 2002
  
  
• Assignment of genome sequences to families of known structure,
  Julian Gough, MRC Laboratory of Molecular Biology, Cambridge, May 22, 2002.
  
  
• Microarrays studies of the ComK regulon in Bacillus Subtilis,
  Randy Berka, Novozymes Biotech, Inc, Davis, California, May 17, 2002.
  
  
• Gene expression analysis and gene regulation: fro m dna microarrays to comparative genomics
  Ph.D. Lecture by Christopher Workman, Friday, March 22, 2002.
  
  
• Parkinson-like neurodegeneration induced by targeted overexpression of alpha-synuclein in the nigrostriatal system,
  Deniz Kirik, Wallenberg Neuroscience Center, Lund University, Sweden, Wednesday, February 6, 2002.
  
  2001

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• Applied Statistics in DNA Microarray Data Analysis
  Talk by Christopher Workman, CBS, Wednesday, December 5, 2001.
  
  
• Profiling the proteome using proteinchip technology< br> Talk by Peter Iversen & Ben Reed, Ciphergen Biosystems A/S, Tuesday, November 27, 2001
  
  
• Prediction of glycosylation sites in proteomes
  Ph.D. Lecture by Ramneek Gupta, Wednesday, October 31, 2001.
  
  
• Protein Structure and the Diversity of Hydrogen B onds
  Ph.D. Lecture by Claus A.F. Andersen, Monday, October 29, 2001.
  
  
• ISMB2001
  9th International Conference on Intelligent Systems for Molecular Biology
  
  
• Bioinformatics2001
  Third Scandinavian conference on Bioinformatics
  
  
• Bioinformatics 2000
  Second, major Scandinavian conference on Bioinformatics