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CPHmodels 3.2 Server

CPHmodels 3.2 is a protein homology modeling server. The template recognition is based on profile-profile alignment guided by secondary structure and exposure predictions.

New in version 3.2: An improvement in the alignment algorithm in case of remote homology modeling where a structure dependant gap penalty has been introduced. Also, there are changes in the output format. A summary line has been included to make parsing easier.

View the version history of this server.

Instructions Output format Article abstract

SUBMISSION

Paste a single sequence or several sequences in FASTA format into the field below:

Submit a file in FASTA format directly from your local disk:

Restrictions:
Only one sequence per submission with not less than 15 and not more than 4,000 amino acids.

Confidentiality:
The sequences are kept confidential and will be deleted after processing.


CITATIONS

For publication of results, please cite:


CPHmodels-3.0 - Remote homology modeling using structure guided sequence profiles
Nielsen M., Lundegaard C., Lund O., Petersen TN
Nucleic Acids Research, 2010, Vol. 38, doi:10.1093/nar/gkq535
View the abstract.

CPHmodels 2.0: X3M a Computer Program to Extract 3D Models.
O. Lund, M. Nielsen, C. Lundegaard, P. Worning
Abstract at the CASP5 conferenceA102, 2002.

View the abstract.





GETTING HELP

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