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Output Format


Description




The output consists of 7 columns:
  • Chain Id
  • Residue number
  • Amino acid
  • Contact number
  • Propensity score
  • DiscoTope score
  • <=B. Identified B cell epitope

    EXAMPLE OUTPUT

    
    DiscoTope predictions for '1a2y'.
    	Looking only at Chain(s):  A
    	propensity score radius = 22.000 Angstroms, Upper Halfsphere radiues = 14.000, windowsize = 1, alpha = 0.115
    	Threshold = -3.700
    
    1. Download Prediction File
    
    2. Download PDB file
    
    3. Download pymol display script
         Note that the file '1a2y.pdb' (from above) must reside
         in the same directory as '1a2y_pymol.pml'
    4. View results in Jmol (please be patient...requires Jmol applet download) Residues colored by binary code - Yellow = predicted epitope residues
    
    
    4. View results in Jmol (please be patient...requires Jmol applet download) Residues colored by DiscoTope score - Red = high score, Blue = low score
    
    
    
    
    A	1	ASP	12	-3.653	-4.613
    A	2	ILE	24	-6.595	-8.597
    A	3	VAL	3	-6.961	-6.505
    A	4	LEU	36	-10.827	-13.722
    A	5	THR	7	-10.343	-9.959
    A	6	GLN	25	-11.905	-13.411
    A	7	SER	5	-10.829	-10.158
    A	8	PRO	9	-10.021	-9.904
    A	9	ALA	0	-9.261	-8.196
    A	10	SER	4	-8.622	-8.090
    A	11	LEU	26	-8.722	-10.709
    A	12	SER	1	-5.088	-4.618
    A	13	ALA	26	-6.063	-8.356
    A	14	SER	1	-3.958	-3.617	<=B
    A	15	VAL	3	-4.265	-4.119
    A	16	GLY	2	-4.568	-4.273
    A	17	GLU	13	-6.781	-7.496
    
    
    Identified 8 B-Cell epitope residues out of 107 total residues
    
    
    
    



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