FeatureMap3D combines protein sequence-based information with
structural data from the
Protein Data Bank
Each query sequence is aligned to the best hit in PDB.
The hit is visualized by mapping the alignment onto the PDB structure
using color-coding for match/mismatch gaps etc. User provided feature annotation
(e.g. phophorylation sites, evolutionary interesting sites or
pattern of alternative splicing) can also be mapped onto the PDB structure.
For publication of results, please cite:
FeatureMap3D - a tool to map protein features and sequence conservation onto homologous structures in the PDB
Rasmus Wernersson, Kristoffer Rapacki, Hans-Henrik Stærfeldt, Peter Wad Sackett, and Anne Mølgaard
Nucl. Acids Res. 2006 34: W84-W88
View the abstract.
The software suite behind the FeatureMap3D server is
open source software (GPL license) and can be downloaded
If you require FeatureMap3D on a commerical license, please contact