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Selection summary: 5 segments, 4 strains, 3 species, 2 genera

Available tables

Row Reference Organism Click to show species Sub-strain Segment Click to show segment Taxgroup Size(bp) Predicted Origin Terminus Signal-to-noise Amplitude GC skew AT skew Purine skew Keto skew Over- represented Oligos Atlas dnaE E. coli Homolog Score|Evalue dnaQ E. coli Homolog Score|Evalue dnaE S. PCC6803 Homolog Score|Evalue polC B. subtillis Homolog Score|Evalue           1 Unpublished Deinococcus geothermalis Strain: DSM11300 DSM11300 Main cir BDDD Deinococcus-Thermus Deinococci NCBI: Tax 319795 2,467,205 bp 6 kbp 1,153 kbp 0.8100 76,736 0.70% ‑2.44% ‑0.35% 1.28% Show Oligos Base Atlas Show report 614.4 | 6e‑177 136.7 | 3.9e‑33 Show report 69.32 | 1.3e‑13 Show report 396.0 | 3e‑111 185.3 | 7.3e‑48 N/A 2 Unpublished [NCBI Entrez] Thermus thermophilus Strain: HB8 Main cir BDDT Deinococcus-Thermus Deinococci NCBI: Tax 300852 1,849,742 bp 372 kbp 932 kbp 1.7614 119,341 2.34% ‑2.09% 0.99% 2.26% Show Oligos Base Atlas Show report 502.7 | 2e‑143 198.0 | 1.1e‑51 58.54 | 1.1e‑09 Show report 73.17 | 6.9e‑15 72.40 | 1.2e‑14 Show report 572.8 | 1e‑164 59.69 | 3.6e‑10 N/A 3 Science. 1999 Nov 19,  286(5444):1571-7 1999 Nov 19 [Abstract] | [PubMed] | [NCBI Entrez] Deinococcus radiodurans Strain: R1 Chr 2 cir BDDD Deinococcus-Thermus Deinococci NCBI: Tax 243230 412,348 bp 171 kbp 301 kbp 0.8220 40,933 0.96% ‑2.34% ‑0.14% 1.42% Show Oligos Base Atlas N/A N/A N/A N/A Science. 1999 Nov 19,  286(5444):1571-7 1999 Nov 19 [Abstract] | [PubMed] | [NCBI Entrez] Chr 1 cir BDDD Deinococcus-Thermus Deinococci NCBI: Tax 243230 2,648,638 bp 2,479 kbp 1,350 kbp 0.3348 28,992 0.09% ‑1.49% ‑0.43% 0.55% Show Oligos Base Atlas Show report 587.4 | 9e‑169 141.4 | 1.6e‑34 Show report 73.56 | 6.9e‑15 Show report 377.1 | 1e‑105 196.4 | 3.3e‑51 N/A 4 Nat Biotechnol. 2004 May,  22(5):547-53. Epub 2004 Apr 4 2004 May [Abstract] | [PubMed] | [NCBI Entrez] Thermus thermophilus Strain: HB27 Main cir BDDT Deinococcus-Thermus Deinococci NCBI: Tax 262724 1,894,877 bp 1,543 kbp 606 kbp 2.0436 140,229 2.31% ‑2.64% 0.80% 2.41% Show Oligos Base Atlas Show report 502.7 | 2e‑143 196.8 | 2.6e‑51 58.54 | 1.1e‑09 Show report 73.17 | 7.1e‑15 72.40 | 1.2e‑14 Show report 572.8 | 1e‑164 59.69 | 3.7e‑10 N/A

REFERENCES

• Peter F. Hallin and David Ussery (2004). CBS Genome Atlas Database: A dynamic storage for bioinformatic results and sequence data Bioinformatics 20:3682-3686 PDF | Pubmed
• Peder Worning, Lars Juhl Jensen, Peter F. Hallin, Hans-Henrik Stærfeldt, and David W. Ussery (2006). Origin of Replication in Circular Prokaryotic Chromosomes Environmental Microbiology 8(2), 353-361 PDF

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