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Selection summary: 5 segments, 4 strains, 3 species, 2 genera  Close the kingdom view of Bacteria and return to index
Available tables

Sigma Factor Predictions by profile HMM

Genome Atlas Database - BACTERIA

Acidobacteria Actinobacteria Aquificae
Bacteroidetes/Chlorobi Chlamydiae/Verrucomicrobia Chloroflexi
Cyanobacteria Deinococcus-Thermus Firmicutes
Fusobacteria Planctomycetes Proteobacteria
Spirochaetes Thermotogae unclassified
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RowReference

Organism
Click to show species
Sub-strain
Segment
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Size(bp)
Sigma 54 FactorsSigma 70 FactorsECF Factors
     
1Unpublished
Deinococcus geothermalis
Strain: DSM11300
DSM11300
Main
cir
2,467,205 bpN/A2 predicted3 predicted
2Unpublished

[NCBI Entrez]
Thermus thermophilus
Strain: HB8
Main
cir
1,849,742 bpN/A1 predictedN/A
3Science. 1999 Nov 19286(5444):1571-7
1999 Nov 19
[Abstract] | [PubMed] | [NCBI Entrez]
Deinococcus radiodurans
Strain: R1
Chr 2
cir
412,348 bpN/AN/AN/A
Science. 1999 Nov 19286(5444):1571-7
1999 Nov 19
[Abstract] | [PubMed] | [NCBI Entrez]
Chr 1
cir
2,648,638 bpN/AN/A1 predicted
4Nat Biotechnol. 2004 May22(5):547-53. Epub 2004 Apr 4
2004 May
[Abstract] | [PubMed] | [NCBI Entrez]
Thermus thermophilus
Strain: HB27
Main
cir
1,894,877 bpN/A1 predictedN/A



CORRESPONDENCE:

Scientific questions: David W. Ussery       Peter Fischer Hallin