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Selection summary: 28 segments, 27 strains, 27 species, 20 genera

Available tables

Row Organism Click to show species Sub-strain Taxgroup Segment Click to show segment %AT Size(bp) Number of genes Coding density Estimated # Proteins Fraction Prot.Length Distribution Reference         1 Aeropyrum pernix Strain: K1 ACTD Crenarchaeota Thermoprotei NCBI: Tax 272557 Main cir 43.7% 1,669,695 bp 2,694 genes 88.7% 620 bp/gene 1,471 genes 83.1% Protein Lengths DNA Res. 1999 Apr 30,  6(2):83-101, 145-52 1999 Apr 30 [Abstract] | [PubMed] | [NCBI Entrez] 2 Archaeoglobus fulgidus Strain: DSM4304 AEAA Euryarchaeota Archaeoglobi NCBI: Tax 224325 Main cir 51.4% 2,178,400 bp 2,407 genes 90.8% 905 bp/gene 2,281 genes 5.5% Protein Lengths Nature. 1997 Nov 27,  390(6658):364-70 1997 Nov 27 [Abstract] | [PubMed] | [NCBI Entrez] 3 Haloarcula marismortui Strain: ATCC43049 AEHH Euryarchaeota Halobacteria NCBI: Tax 272569 Chr 1 cir 37.6% 3,131,724 bp 3,131 genes 86.2% 1,000 bp/gene 2,378 genes 31.7% Protein Lengths Genome Res. 2004 Nov,  14(11):2221-34 2004 Nov [Abstract] | [PubMed] | [NCBI Entrez] AEHH Euryarchaeota Halobacteria NCBI: Tax 272569 Chr 2 cir 42.8% 288,050 bp 281 genes 76.6% 1,025 bp/gene 165 genes 70.3% Protein Lengths Genome Res. 2004 Nov,  14(11):2221-34 2004 Nov [Abstract] | [PubMed] | [NCBI Entrez] 4 Halobacterium species Strain: NRC1 AEHH Euryarchaeota Halobacteria NCBI: Tax 64091 Main cir 32.1% 2,014,239 bp 2,058 genes 87.6% 979 bp/gene 1,611 genes 27.7% Protein Lengths Proc Natl Acad Sci U S A. 2000 Oct 24,  97(22):12176-81 2000 Oct 24 [Abstract] | [PubMed] | [NCBI Entrez] 5 Methanobacterium thermoautotrophicum Strain: delta-H AEMMb Euryarchaeota Methanobacteria NCBI: Tax 187420 Main cir 50.5% 1,751,377 bp 1,869 genes 90.2% 937 bp/gene 1,551 genes 20.5% Protein Lengths J Bacteriol. 1997 Nov,  179(22):7135-55 1997 Nov [Abstract] | [PubMed] | [NCBI Entrez] 6 Methanocaldococcus jannaschii Strain: DSM2661 AEMMc Euryarchaeota Methanococci NCBI: Tax 243232 Main cir 68.6% 1,664,970 bp 1,715 genes 87.2% 971 bp/gene 1,558 genes 10.1% Protein Lengths Science. 1996 Aug 23,  273(5278):1058-73 1996 Aug 23 [Abstract] | [PubMed] | [NCBI Entrez] 7 Methanococcoides burtonii Strain: DSM6242 AEMM Euryarchaeota Methanomicrobia NCBI: Tax 259564 Main cir 59.2% 2,575,032 bp 2,273 genes 80.3% 1,133 bp/gene 1,940 genes 17.2% Protein Lengths Unpublished 8 Methanococcus maripaludis Strain: S2 AEMMc Euryarchaeota Methanococci NCBI: Tax 267377 Main cir 66.9% 1,661,137 bp 1,722 genes 88.9% 965 bp/gene 1,515 genes 13.7% Protein Lengths Unpublished [NCBI Entrez] 9 Methanopyrus kandleri Strain: AV19 AEMM Euryarchaeota Methanopyri NCBI: Tax 190192 Main cir 38.8% 1,694,969 bp 1,691 genes 88.7% 1,002 bp/gene 1,554 genes 8.8% Protein Lengths Proc Natl Acad Sci U S A. 2002 Apr 2,  99(7):4644-9 2002 Apr 2 [Abstract] | [PubMed] | [NCBI Entrez] 10 Methanosarcina acetivorans Strain: C2A AEMM Euryarchaeota Methanomicrobia NCBI: Tax 188937 Main cir 57.3% 5,751,492 bp 4,540 genes 74.0% 1,267 bp/gene 3,628 genes 25.1% Protein Lengths Genome Res. 2002 Apr,  12(4):532-42 2002 Apr [Abstract] | [PubMed] | [NCBI Entrez] 11 Methanosarcina barkeri Strain: fusaro AEMM Euryarchaeota Methanomicrobia NCBI: Tax 269797 Chr 1 cir 60.7% 4,837,408 bp 3,607 genes 69.6% 1,341 bp/gene 3,014 genes 19.7% Protein Lengths Unpublished [NCBI Entrez] 12 Methanosarcina mazei Strain: Goe1 AEMM Euryarchaeota Methanomicrobia NCBI: Tax 192952 Main cir 58.5% 4,096,345 bp 3,371 genes 74.9% 1,215 bp/gene 2,823 genes 19.4% Protein Lengths J Mol Microbiol Biotechnol. 2002 Jul,  4(4):453-61 2002 Jul [Abstract] | [PubMed] | [NCBI Entrez] 13 Methanosphaera stadtmanae Strain: DSM3091 AEMMb Euryarchaeota Methanobacteria NCBI: Tax 339860 Main cir 72.4% 1,767,403 bp 1,534 genes 84.0% 1,152 bp/gene 1,327 genes 15.6% Protein Lengths J Bacteriol. 2006 Jan,  188(2):642-58 2006 Jan [Abstract] | [PubMed] 14 Methanospirillum hungatei Strain: JF-1 AEMM Euryarchaeota Methanomicrobia NCBI: Tax 323259 Main cir 54.9% 3,544,738 bp 3,139 genes 85.9% 1,129 bp/gene 2,648 genes 18.5% Protein Lengths Unpublished 15 Nanoarchaeum equitans Strain: Kin4M ANN Nanoarchaeota Nanoarchaeum NCBI: Tax 228908 Main cir 68.4% 490,885 bp 536 genes 92.1% 916 bp/gene 471 genes 13.8% Protein Lengths Proc Natl Acad Sci U S A. 2003 Oct 28,  100(22):12984-8. Epub 2003 Oct 17 2003 Oct 28 [Abstract] | [PubMed] | [NCBI Entrez] 16 Natronomonas pharaonis Strain: DSM2160 AEHH Euryarchaeota Halobacteria NCBI: Tax 348780 Main cir 36.6% 2,595,221 bp 2,675 genes 90.8% 970 bp/gene 2,059 genes 29.9% Protein Lengths Genome Res. 2005 Oct,  15(10):1336-43. Epub 2005 Sep 16 2005 Oct [Abstract] | [PubMed] | [NCBI Entrez] 17 Picrophilus torridus Strain: DSM9790 AETT Euryarchaeota Thermoplasmata NCBI: Tax 263820 Main cir 64.0% 1,545,895 bp 1,535 genes 91.4% 1,007 bp/gene 1,325 genes 15.8% Protein Lengths Unpublished [NCBI Entrez] 18 Pyrobaculum aerophilum Strain: IM2 ACTT Crenarchaeota Thermoprotei NCBI: Tax 178306 Main cir 48.6% 2,222,430 bp 2,605 genes 88.4% 853 bp/gene 1,762 genes 47.8% Protein Lengths Proc Natl Acad Sci U S A. 2002 Jan 22,  99(2):984-9. Epub 2002 Jan 15 2002 Jan 22 [Abstract] | [PubMed] | [NCBI Entrez] 19 Pyrococcus abyssi Strain: GE5 AETT Euryarchaeota Thermococci NCBI: Tax 272844 Main cir 55.3% 1,765,118 bp 1,784 genes 0.0% 989 bp/gene 1,626 genes 9.7% Protein Lengths J Mol Biol. 2000 Apr 7,  297(4):895-906 2000 Apr 7 [Abstract] | [PubMed] | [NCBI Entrez] 20 Pyrococcus furiosus Strain: DSM3638 AETT Euryarchaeota Thermococci NCBI: Tax 186497 Main cir 59.2% 1,908,256 bp 2,065 genes 91.0% 924 bp/gene 1,749 genes 18.1% Protein Lengths Genetics. 1999 Aug,  152(4):1299-305 1999 Aug [Abstract] | [PubMed] | [NCBI Entrez] 21 Pyrococcus horikoshii Strain: OT3 AETT Euryarchaeota Thermococci NCBI: Tax 70601 Main cir 58.1% 1,738,505 bp 2,061 genes 90.7% 844 bp/gene 1,557 genes 32.4% Protein Lengths DNA Res. 1998 Apr 30,  5(2):55-76 1998 Apr 30 [Abstract] | [PubMed] | [NCBI Entrez] 22 Sulfolobus acidocaldarius Strain: DSM639 ACTS Crenarchaeota Thermoprotei Main cir 63.3% 2,225,959 bp 2,223 genes 84.9% 1,001 bp/gene 1,753 genes 26.8% Protein Lengths J Bacteriol 2005 Jul,  187(14):4992-9 2005 Jul [Abstract] | [PubMed] 23 Sulfolobus solfataricus Strain: P2 ACTS Crenarchaeota Thermoprotei Main cir 64.2% 2,992,245 bp 2,995 genes 100.0% 999 bp/gene 2,339 genes 28.0% Protein Lengths Unpublished [NCBI Entrez] 24 Sulfolobus tokodaii Strain: 7 ACSSS Crenarchaeota unclassified Main cir 67.2% 2,694,765 bp 2,826 genes 83.1% 954 bp/gene 2,068 genes 36.7% Protein Lengths DNA Res ,  8(4):123-40 2001 Aug 31 [Abstract] | [PubMed] | [NCBI Entrez] 25 Thermococcus kodakaraensis Strain: KOD1 AETT Euryarchaeota Thermococci Main cir 48.0% 2,088,737 bp 2,306 genes 91.6% 906 bp/gene 1,830 genes 26.0% Protein Lengths Unpublished 26 Thermoplasma acidophilum Strain: DSM1728 AETT Euryarchaeota Thermoplasmata Main cir 54.0% 1,564,906 bp 1,478 genes 86.6% 1,059 bp/gene 1,286 genes 14.9% Protein Lengths Nature 2000 Sep 28,  407(6803):508-13 2000 Sep 28 [Abstract] | [PubMed] | [NCBI Entrez] 27 Thermoplasma volcanium Strain: GSS1 AETT Euryarchaeota Thermoplasmata Main cir 60.1% 1,584,804 bp 1,526 genes 85.7% 1,039 bp/gene 1,277 genes 19.5% Protein Lengths Proc Natl Acad Sci U S A 2000 Dec 19,  97(26):14257-62 2000 Dec 19 [Abstract] | [PubMed]

REFERENCES

• Marie Skovgaard, Lars Juhl Jensen, Søren Brunak, David W. Ussery, and Anders Krogh (2001). On the Total Number of Genes and Their Length Distribution in Complete Microbial Genomes Trends in Genetics 17:425-428. PDF | Pubmed
• Peter F. Hallin and David Ussery (2004). CBS Genome Atlas Database: A dynamic storage for bioinformatic results and sequence data Bioinformatics 20:3682-3686 PDF | Pubmed

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